Glyma13g44330 - SoyBase

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Report for Sequence Feature Glyma13g44330

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43790631
stop:	43795140
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g44330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48900	AT	Annotation by Michelle Graham. TAIR10: Signal recognition particle, SRP54 subunit protein \| chr1:18084972-18087743 REVERSE LENGTH=495	SoyBase	E_val: 0	ISS
GO:0006614	GO-bp	Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane	SoyBase	N/A	ISS
GO:0006617	GO-bp	Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0048500	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003729	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mRNA binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0008312	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0780	KOG	Signal recognition particle, subunit Srp54	JGI		ISS
PTHR11564	Panther	GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS	JGI		ISS
PTHR11564:SF5	Panther	SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT	JGI		ISS
PF00448	PFAM	SRP54-type protein, GTPase domain	JGI		ISS
PF02881	PFAM	SRP54-type protein, helical bundle domain	JGI		ISS
PF02978	PFAM	Signal peptide binding domain	JGI		ISS
UniRef100_B9RV94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 54 kD protein, putative n=1 Tax=Ricinus communis RepID=B9RV94_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M5V2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5V2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g44330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g44330

Paralog	Evidence	Comments
Glyma15g00930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g44330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g366500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g44330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g44330

Limit To All Plant Sequences

>Glyma13g44330.1   sequence type=CDS   gene model=Glyma13g44330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGGCGGAGTTAGGTGGGAGCATTTCGCGTGCTCTCCAGCTGATGAGCAATGCGACAGTAATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTCCGCGACATGCAGACCAACATCAAGAACATTGTCAACCTCGACGATCTCGCTGCCGGTCACAACAAACGCAGGATCATCCAACAAGCTGTGTTTAACGAACTCTGCAAAATTCTGGACCCTGGGAAGCCCTCTTTCACTCCCAAAAAGGGCAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGGTTCTGGAAAAACCACAACGTGTACAAAGTATGCATATTATCATCAGAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCCGATCCGGTAAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGAGGCACAAACAAGAAGCTTCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAAGCATTTAAGCAGAGTGTTGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGACGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGAATGGGCGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTCGTTCCTATGGATCAACAACCTGAACTGCTTCAGAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTTTTTTCTATGCTTCCCGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCCAAGCTCATGAATGAGTCACGCATGATGCGGATAGCTCGAGGTGCAGGTCGTCAGATTAGGGAAGTGATGGAGATGTTGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAAGGTGATATGAGTGCCCTATCCCGAAATATGAATGCCCAACACATGAGCAAAGTCCTTCCTCCTCAGATGCTGAAGCAAATTGGTGGCATGGGTGGGTTACAAAACTTGATGAAGCAGATGGGATCCGCCAAAGACATGATGGGAATGGGAGGAATGTTTGGTGGTGGTGGTGGTGGTGATTAG

Predicted protein sequences of Glyma13g44330

Limit To All Plant Sequences

>Glyma13g44330.1   sequence type=predicted peptide   gene model=Glyma13g44330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLAELGGSISRALQLMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEASLFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGAGRQIREVMEMLEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGMFGGGGGGD*

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