SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80080 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr1:30128073-30129563 REVERSE LENGTH=496 | SoyBase | E_val: 0 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0008356 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asymmetric cell division | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0042127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0617 | KOG | Ras suppressor protein (contains leucine-rich repeats) | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7II76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7II76_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M5U6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M5U6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g44270 not represented in the dataset |
Glyma13g44270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g365900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g44270.2 sequence type=CDS gene model=Glyma13g44270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGATTCCGGCGTGCCGTCCACCCTAGTTGACGGTCCACAAACGGGATTTTCCATGAACCAAGACGGTTCCCGAACCGACAAGCGAGAGCAAGAAGCAGTGTACGACATCATGCGAGCCACCGGAAACGCTTGGGCCACCGACATCCCCGACGTGTGCCGCGGCCGCTGGCACGGCATCGAGTGCATGCCCGACAAGGACGACGTTTTCCACGTCGTTTCCCTCTCATTCGGAGCACTCTCCGATGATACCGCTTTTCCGACATGCGACCCAACCCGCTCCTTCATCTCAGCCTCCATCGCCAACCTCCCTCACCTCAAGACCTTGTTCTTTTACCGTTGTTTCAGTTACAACCCTCAGCCCATCCCATCCTTCTTGGGCCTATTGGGCCCGTCCTTGCAAACCTTGGTCCTCAGAGAAAACGGCCACGTTGGGCCCATTCCTGTTGAATTGGGCAACCTCACCCGTTTGAGGGTACTTGATCTTCACAAAAACAACCTCAACGGCTCCATACCCATCTCCTTGGGCCGTATCACTGGTTTAAGGTCTTTGGATTTAAGCGGCAACAAAATAACCGGTTCCATACCCGGTTTTGCCTTCCCCTCTTTGAACGTATTGGACCTTAGCCAGAACCTTCTCATGGGCTCAATTCCTTCTACCTTTTGGGACTGCTACTCTCTCATCAAATTGGATTTCAGTCGCAACCGGCTCGTGGGCCCATTGCCGGAGAAGCCCATGGGCCTGAAGGATCTCATGCTTTTGGATTTAAGCTACAATCGTATCCAAGGCCCATTTCCGGGATCACTCAAGAGCCTGAGTTCTCTTCAAGGAACTCCATGGGTTCGACGAGCATACCCGATGATGGGTTCGAATGGTATGAAGGCCCTAATGATCCTTGTTTTGTCTAATATGAATTGGCATGGGCCGGTCCCAGAATCACTAGGCAAGTTGCGAAACCTTCGGGTGCTTCATCTGGATGGCAACCACTTCAATGGGTCAATTCCGAAGAGTTTTCGAGATTTGAGAAGCCTTAGTGAATTGAGGCTGAATGATAATGGGCTTATTGGGTCGGTCCCATTTGACAGAGAAATGGTATGGAGGATGAAAAGGAAGCTAAGGTTGAATAATAATTCAGGGCTTTGCTATGATGCAAGTAGTGGTTTAGGGGATAGCATGGATTCCACATTTGATTTAGGTATCAGTTTGTGTGACACTTCGAATCCAGGGTCGGTTAGGACAGTGCAACATCTTTCGGCTACCCAAAAGTTAATGCCCGTCACATCAGATGCTGTGGAAGCACTTACTTCATGGTCACTGGGACTAACTACTTTTGTACTGTTTTTCTATAATTTTGTTGTCAGTTGTAAATATTCATATCAATAG
>Glyma13g44270.2 sequence type=predicted peptide gene model=Glyma13g44270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDSGVPSTLVDGPQTGFSMNQDGSRTDKREQEAVYDIMRATGNAWATDIPDVCRGRWHGIECMPDKDDVFHVVSLSFGALSDDTAFPTCDPTRSFISASIANLPHLKTLFFYRCFSYNPQPIPSFLGLLGPSLQTLVLRENGHVGPIPVELGNLTRLRVLDLHKNNLNGSIPISLGRITGLRSLDLSGNKITGSIPGFAFPSLNVLDLSQNLLMGSIPSTFWDCYSLIKLDFSRNRLVGPLPEKPMGLKDLMLLDLSYNRIQGPFPGSLKSLSSLQGTPWVRRAYPMMGSNGMKALMILVLSNMNWHGPVPESLGKLRNLRVLHLDGNHFNGSIPKSFRDLRSLSELRLNDNGLIGSVPFDREMVWRMKRKLRLNNNSGLCYDASSGLGDSMDSTFDLGISLCDTSNPGSVRTVQHLSATQKLMPVTSDAVEALTSWSLGLTTFVLFFYNFVVSCKYSYQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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