SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59630 | AT | Annotation by Michelle Graham. TAIR10: diphthamide synthesis DPH2 family protein | chr3:22025355-22027776 REVERSE LENGTH=491 | SoyBase | E_val: 1.00E-165 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0017183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2648 | KOG | Diphthamide biosynthesis protein | JGI | ISS | |
| PTHR10762 | Panther | DIPTHERIA TOXIN RESISTANCE PROTEIN-RELATED | JGI | ISS | |
| PTHR10762:SF2 | Panther | DIPHTERIA TOXIN RESISTANCE PROTEIN 2, DPH2 | JGI | ISS | |
| PF01866 | PFAM | Putative diphthamide synthesis protein | JGI | ISS | |
| UniRef100_B9SX45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diphteria toxin resistance protein 2, dph2, putative n=1 Tax=Ricinus communis RepID=B9SX45_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B380 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B380 related cluster n=1 Tax=unknown RepID=UPI000233B380 | SoyBase | E_val: 0 | ISS |
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Glyma13g44190 not represented in the dataset |
Glyma13g44190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g01090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g365100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g44190.2 sequence type=CDS gene model=Glyma13g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTTGAATCAAATTATGATATTGCTGCCTCTGCCAACTTCATTCACACACACAACTTCACCAGAGTTGCTTTGCAAAATCACATGTACTATGGCAGTTGCTGTATTGATGAAGTTGGAGCATCGCACATTAACGCTGATTTTGTCATACATTATGGGCATACATGTTTTAGTCCGACAACAACTCTACCAGTCTTTTGTGTTTTTGGGAAGGCTTCCATTTGCGTAGCTGATTGTGTTGAAAGTATGTCAAAATATGCACTGAGAAATAGTAAGCCTATCATGGTCCTTTTTGGGCTGGAGTATGCACACTCAATGCGACAGATTAAAGAAGCACTGCTAGAATCATCAATGTCATGCAGATATGACCCTATGCCAGAAGTTCACTTTGCTGATGTTCCATCTTCAGTTATTGATTGCAATGGAGCAAGTGGGACTGTATATAGCATTGGAGGATTGGCGTGGAAATTACCTGAGGGACAAAGCATGGACGACTACTTGCTCTTTTGGATTGGACATGATGATTCAGCTTTTGCTAATGTTGTGCTCACATTCAATGCCTGTGAAATAGTCAGATATGATGCAAATGAAAATCGAATGGTGACAGACTTGTTTCAACAAAAGAGGATTCTTAAACGTAGGTATATATTACCTGGTGTTGGGATTTTAGTTGGAACTCTTGGTGTTGCTGGTTATCTTCACATAATCAATCAGATGATGGAGCTCATTACTGGGGCAGGCAAGAAGGCATATACTTTGGTTATGGGAAGACCGAACCCAGCTAAACTTGCTAACTTTCCTGAGTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGTTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTTTCAATAGAGGAAGCCAATGGACAGGAGCCTATGTCATGGAATTTCGAGATCTAATTAATTTGCCTCAAATGGAAGTTGGAAACCAGGAAGAAGAAGCACGGTTTTCATTCTTGAAGGGTGGATATGTTGATGACTTTGAAAATCAAGAAAATGCTGAAGAAGAAAGGGAAACTCTCGCTCTAGTAAATGCAACAGAAAAGGCACTGCAGTTGCAGAATAACTCGAATGCTCTAATGAAAGGGAATGCAAGATCAGGAGTGGAATTTTTGGCAAATCGATCTTATCAGGGTCTGAATATGTCTAGTGAGAACGCCTCCCCAGAACCATATCTCATTGGACGGAGAGGAAGGGCATCTGGGTACGAGGATGAGAAGAAAAAACAATGA
>Glyma13g44190.2 sequence type=predicted peptide gene model=Glyma13g44190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFESNYDIAASANFIHTHNFTRVALQNHMYYGSCCIDEVGASHINADFVIHYGHTCFSPTTTLPVFCVFGKASICVADCVESMSKYALRNSKPIMVLFGLEYAHSMRQIKEALLESSMSCRYDPMPEVHFADVPSSVIDCNGASGTVYSIGGLAWKLPEGQSMDDYLLFWIGHDDSAFANVVLTFNACEIVRYDANENRMVTDLFQQKRILKRRYILPGVGILVGTLGVAGYLHIINQMMELITGAGKKAYTLVMGRPNPAKLANFPECDVFLYVSCAQTALLDSKEYLAPVITPFEAMIAFNRGSQWTGAYVMEFRDLINLPQMEVGNQEEEARFSFLKGGYVDDFENQENAEEERETLALVNATEKALQLQNNSNALMKGNARSGVEFLANRSYQGLNMSSENASPEPYLIGRRGRASGYEDEKKKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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