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Report for Sequence Feature Glyma13g44030

Feature Type:gene_model
Chromosome:Gm13
Start:43583597
stop:43588928
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80210AT Annotation by Michelle Graham. TAIR10: Mov34/MPN/PAD-1 family protein | chr1:30163357-30165628 REVERSE LENGTH=406 SoyBaseE_val: 0ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1555 KOG 26S proteasome regulatory complex, subunit RPN11 JGI ISS
PTHR10410Panther JUN ACTIVATION DOMAIN BINDING PROTEIN JGI ISS
PTHR10410:SF2Panther 26S PROTEASOME REGULATORY SUBUNIT-RELATED JGI ISS
PF01398PFAM Mov34/MPN/PAD-1 family JGI ISS
UniRef100_G7IMH2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lys-63-specific deubiquitinase BRCC36 n=1 Tax=Medicago truncatula RepID=G7IMH2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M5R8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5R8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g44030 not represented in the dataset

Glyma13g44030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g01310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g363400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g44030.2   sequence type=transcript   gene model=Glyma13g44030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCACTTGAAAAAAACAGTGAGAAATGAAAATGATTGATATTAGCCTCCAAATAGGAATTAAGATCTAGGTTAGGGTAGTAGTAGGGATTAAATATAGAGAAAAAATAGGATTAATTGAATTGCCAAGAAGAGTAACTCAGCTCAACTCAAGTGTTTGTTATTGTTTATCGAGTTGAGGCTCAGGACCCGACGAACGACGGAGAAACAGAGATTAATCGGGGAAGGGTTTAGGGTTTGTGAGTGGAAAAATCGAATCGAATCGAATTGAGAATGTCTCTGACGAGCGTGAAAATGTCGGAGGAAGTGTGGTTGAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCCAGCATTCGAAAAACGGGAGCGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTCATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCATAATCACATGTCAAGACCTGTACCTCTATCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCAGAGAATGTATCAACAAGACCTGGTTACTTCAAAGCAGAGAATGCTGAGCAGGACACTGGCGATTCAAGAAGTGTTGTTGTCAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTCGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCTGACACCAACATAGTTGATGTTGATGCCATGGATATGTCAGAAAGTATGCAGGAGGCTATGCATCGTTCCAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACATTGATTCGCCACTATCATCATACACTGATCTGCAACATGTACTATTTGAAGAGGAGCGAAATGCATATAATCAAGCCATCTTACAAAATAAGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGTTGATTGAATATTGGTCAGAGCAAAATGTCCATTATTTGTTCCTCCTTATTTTCTTTGTTACCTTTCTAATAACCATTTACTACTTTCTGACCTTGCAGTTTAAGTCCTGCTATAAATGCACTTCAAGATCGACTGAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGGGAAGAAGCCAAAAGTCTGGAAGCTGAGGCATATAGAGGGAGTGAAGCAAGTGTAGGAACTCCACGTCGAGTTGCATCTCCTGTACATCGAGGAGGTTCCTCTCCTGGTCTGAGAAACTTGCATGACTCACCTGAATCACTCGGCTCTAGGAATGTAGCTAGTCCTGGTAGCAGGAGCAGAAAAGGATATTAAAGTGACACCCTCTTTGGGAGTAATGCTCCAAACAATATAAACGATGATGGTTTACAATGGTTTTGCTAAAATGGAATGTTTAATATATAGAATGTACATGGAAATGGTATTGCCTGAGCAAAGTTTGCTAGTTGAAAATGATGCTAAATGAAGTATCCTGCTAGTAAGACTCTAATAGTGTAGAAACGGTGGTTTGGTGAGTTCATTCACTTGGAAGAACTCATTGAATTATCAAATGACATGCATGGTTGGATTAGAAGTATGTTAAATAGCCCCGATCCCATGCTAATGAAATTAAAGCAGGGTTAGATGATGAGGGGAGGAAAAAAAAAATTTACACAGAAATACAGAATCCTATACTGTCGCAATTGTTGCTGCTATTTTCAACGTGGAAAAGGATTTTGGTAAAAAAGAAAAGAAAAGATTAATGACTTGTGATTTGGTTAAGCATAGCCATACGATGAAAAGGAACAATGAAATAATGATAAATACAAATTAACTTTTCAT

>Glyma13g44030.1   sequence type=CDS   gene model=Glyma13g44030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGACGAGCGTGAAAATGTCGGAGGAAGTGTGGTTGAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCCAGCATTCGAAAAACGGGAGCGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTCATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCATAATCACATGTCAAGACCTGTACCTCTATCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCAGAGAATGTATCAACAAGACCTGGTTACTTCAAAGCAGAGAATGCTGAGCAGGACACTGGCGATTCAAGAAGTGTTGTTGTCAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTCGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCTGACACCAACATAGTTGATGTTGATGCCATGGATATGTCAGAAAGTATGCAGGAGGCTATGCATCGTTCCAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACATTGATTCGCCACTATCATCATACACTGATCTGCAACATGTACTATTTGAAGAGGAGCGAAATGCATATAATCAAGCCATCTTACAAAATAAGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGTTGATTGAATATTGTTTAAGTCCTGCTATAAATGCACTTCAAGATCGACTGAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGGGAAGAAGCCAAAAGTCTGGAAGCTGAGGCATATAGAGGGAGTGAAGCAAGTGTAGGAACTCCACGTCGAGTTGCATCTCCTGTACATCGAGGAGGTTCCTCTCCTGGTCTGAGAAACTTGCATGACTCACCTGAATCACTCGGCTCTAGGAATGTAGCTAGTCCTGGTAGCAGGAGCAGAAAAGGATATTAA

>Glyma13g44030.2   sequence type=CDS   gene model=Glyma13g44030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGACGAGCGTGAAAATGTCGGAGGAAGTGTGGTTGAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCCAGCATTCGAAAAACGGGAGCGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTCATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCATAATCACATGTCAAGACCTGTACCTCTATCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCAGAGAATGTATCAACAAGACCTGGTTACTTCAAAGCAGAGAATGCTGAGCAGGACACTGGCGATTCAAGAAGTGTTGTTGTCAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTCGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCTGACACCAACATAGTTGATGTTGATGCCATGGATATGTCAGAAAGTATGCAGGAGGCTATGCATCGTTCCAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACATTGATTCGCCACTATCATCATACACTGATCTGCAACATGTACTATTTGAAGAGGAGCGAAATGCATATAATCAAGCCATCTTACAAAATAAGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGTTGATTGAATATTGGTCAGAGCAAAATGTCCATTATTTGTTCCTCCTTATTTTCTTTGTTACCTTTCTAATAACCATTTACTACTTTCTGACCTTGCAGTTTAAGTCCTGCTATAAATGCACTTCAAGATCGACTGAGAGAGAATGA

>Glyma13g44030.1   sequence type=predicted peptide   gene model=Glyma13g44030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLTSVKMSEEVWLSCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKHNHMSRPVPLSPVNRSPVIDIDSSPSSSENVSTRPGYFKAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDAMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINIDSPLSSYTDLQHVLFEEERNAYNQAILQNKRDGKVHPLTFIHHTSTYQASLCKLIEYCLSPAINALQDRLRENEIRLAVLREEAKSLEAEAYRGSEASVGTPRRVASPVHRGGSSPGLRNLHDSPESLGSRNVASPGSRSRKGY*

>Glyma13g44030.2   sequence type=predicted peptide   gene model=Glyma13g44030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLTSVKMSEEVWLSCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKHNHMSRPVPLSPVNRSPVIDIDSSPSSSENVSTRPGYFKAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDAMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINIDSPLSSYTDLQHVLFEEERNAYNQAILQNKRDGKVHPLTFIHHTSTYQASLCKLIEYWSEQNVHYLFLLIFFVTFLITIYYFLTLQFKSCYKCTSRSTERE*







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