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Report for Sequence Feature Glyma13g44030
Feature Type: gene_model
Chromosome: Gm13
Start: 43583597
stop: 43588928
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g44030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G80210 AT
Annotation by Michelle Graham. TAIR10: Mov34/MPN/PAD-1 family protein | chr1:30163357-30165628 REVERSE LENGTH=406
SoyBase E_val: 0 ISS
GO:0006281 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA repair
SoyBase N/A ISS
GO:0006310 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA recombination
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1555
KOG
26S proteasome regulatory complex, subunit RPN11
JGI ISS
PTHR10410 Panther
JUN ACTIVATION DOMAIN BINDING PROTEIN
JGI ISS
PTHR10410:SF2 Panther
26S PROTEASOME REGULATORY SUBUNIT-RELATED
JGI ISS
PF01398 PFAM
Mov34/MPN/PAD-1 family
JGI ISS
UniRef100_G7IMH2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Lys-63-specific deubiquitinase BRCC36 n=1 Tax=Medicago truncatula RepID=G7IMH2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1M5R8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5R8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g44030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g44030
Paralog Evidence Comments
Glyma15g01310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g44030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g363400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g44030
Transcripts of Glyma13g44030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g44030.2 sequence type=transcript gene model=Glyma13g44030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCTCACTTGAAAAAAACAGTGAGAAATGAAAATGATTGATATTAGCCTCCAAATAGGAATTAAGATCTAGGTTAGGGTAGTAGTAGGGATTAAATATAGAGAAAAAATAGGATTAATTGAATTGCCAAGAAGAGTAACTCAGCTCAACTCAAGTGTTTGTTATTGTTTATCGAGTTGAGGCTCAGGACCCGACGAACGACGGAGAAACAGAGATTAATCGGGGAAGGGTTTAGGGTTTGTGAGTGGAAAAATCGAATCGAATCGAATTGAGAATGTCTCTGACGAGCGTGAAAATGTCGGAGGAAGTGTGGTTGAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCCAGCATTCGAAAAACGGGAGCGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTCATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCATAATCACATGTCAAGACCTGTACCTCTATCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCAGAGAATGTATCAACAAGACCTGGTTACTTCAAAGCAGAGAATGCTGAGCAGGACACTGGCGATTCAAGAAGTGTTGTTGTCAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTCGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCTGACACCAACATAGTTGATGTTGATGCCATGGATATGTCAGAAAGTATGCAGGAGGCTATGCATCGTTCCAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACATTGATTCGCCACTATCATCATACACTGATCTGCAACATGTACTATTTGAAGAGGAGCGAAATGCATATAATCAAGCCATCTTACAAAATAAGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGTTGATTGAATATTGGTCAGAGCAAAATGTCCATTATTTGTTCCTCCTTATTTTCTTTGTTACCTTTCTAATAACCATTTACTACTTTCTGACCTTGCAGTTTAAGTCCTGCTATAAATGCACTTCAAGATCGACTGAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGGGAAGAAGCCAAAAGTCTGGAAGCTGAGGCATATAGAGGGAGTGAAGCAAGTGTAGGAACTCCACGTCGAGTTGCATCTCCTGTACATCGAGGAGGTTCCTCTCCTGGTCTGAGAAACTTGCATGACTCACCTGAATCACTCGGCTCTAGGAATGTAGCTAGTCCTGGTAGCAGGAGCAGAAAAGGATATTAAAGTGACACCCTCTTTGGGAGTAATGCTCCAAACAATATAAACGATGATGGTTTACAATGGTTTTGCTAAAATGGAATGTTTAATATATAGAATGTACATGGAAATGGTATTGCCTGAGCAAAGTTTGCTAGTTGAAAATGATGCTAAATGAAGTATCCTGCTAGTAAGACTCTAATAGTGTAGAAACGGTGGTTTGGTGAGTTCATTCACTTGGAAGAACTCATTGAATTATCAAATGACATGCATGGTTGGATTAGAAGTATGTTAAATAGCCCCGATCCCATGCTAATGAAATTAAAGCAGGGTTAGATGATGAGGGGAGGAAAAAAAAAATTTACACAGAAATACAGAATCCTATACTGTCGCAATTGTTGCTGCTATTTTCAACGTGGAAAAGGATTTTGGTAAAAAAGAAAAGAAAAGATTAATGACTTGTGATTTGGTTAAGCATAGCCATACGATGAAAAGGAACAATGAAATAATGATAAATACAAATTAACTTTTCAT
Coding sequences of Glyma13g44030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g44030.1 sequence type=CDS gene model=Glyma13g44030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCTGACGAGCGTGAAAATGTCGGAGGAAGTGTGGTTGAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCCAGCATTCGAAAAACGGGAGCGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTCATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCATAATCACATGTCAAGACCTGTACCTCTATCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCAGAGAATGTATCAACAAGACCTGGTTACTTCAAAGCAGAGAATGCTGAGCAGGACACTGGCGATTCAAGAAGTGTTGTTGTCAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTCGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCTGACACCAACATAGTTGATGTTGATGCCATGGATATGTCAGAAAGTATGCAGGAGGCTATGCATCGTTCCAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACATTGATTCGCCACTATCATCATACACTGATCTGCAACATGTACTATTTGAAGAGGAGCGAAATGCATATAATCAAGCCATCTTACAAAATAAGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGTTGATTGAATATTGTTTAAGTCCTGCTATAAATGCACTTCAAGATCGACTGAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGGGAAGAAGCCAAAAGTCTGGAAGCTGAGGCATATAGAGGGAGTGAAGCAAGTGTAGGAACTCCACGTCGAGTTGCATCTCCTGTACATCGAGGAGGTTCCTCTCCTGGTCTGAGAAACTTGCATGACTCACCTGAATCACTCGGCTCTAGGAATGTAGCTAGTCCTGGTAGCAGGAGCAGAAAAGGATATTAA
>Glyma13g44030.2 sequence type=CDS gene model=Glyma13g44030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCTGACGAGCGTGAAAATGTCGGAGGAAGTGTGGTTGAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCCAGCATTCGAAAAACGGGAGCGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTCATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCATAATCACATGTCAAGACCTGTACCTCTATCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCAGAGAATGTATCAACAAGACCTGGTTACTTCAAAGCAGAGAATGCTGAGCAGGACACTGGCGATTCAAGAAGTGTTGTTGTCAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTCGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCTGACACCAACATAGTTGATGTTGATGCCATGGATATGTCAGAAAGTATGCAGGAGGCTATGCATCGTTCCAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACATTGATTCGCCACTATCATCATACACTGATCTGCAACATGTACTATTTGAAGAGGAGCGAAATGCATATAATCAAGCCATCTTACAAAATAAGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGTTGATTGAATATTGGTCAGAGCAAAATGTCCATTATTTGTTCCTCCTTATTTTCTTTGTTACCTTTCTAATAACCATTTACTACTTTCTGACCTTGCAGTTTAAGTCCTGCTATAAATGCACTTCAAGATCGACTGAGAGAGAATGA
Predicted protein sequences of Glyma13g44030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g44030.1 sequence type=predicted peptide gene model=Glyma13g44030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLTSVKMSEEVWLSCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKHNHMSRPVPLSPVNRSPVIDIDSSPSSSENVSTRPGYFKAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDAMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINIDSPLSSYTDLQHVLFEEERNAYNQAILQNKRDGKVHPLTFIHHTSTYQASLCKLIEYCLSPAINALQDRLRENEIRLAVLREEAKSLEAEAYRGSEASVGTPRRVASPVHRGGSSPGLRNLHDSPESLGSRNVASPGSRSRKGY*
>Glyma13g44030.2 sequence type=predicted peptide gene model=Glyma13g44030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLTSVKMSEEVWLSCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKHNHMSRPVPLSPVNRSPVIDIDSSPSSSENVSTRPGYFKAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDAMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINIDSPLSSYTDLQHVLFEEERNAYNQAILQNKRDGKVHPLTFIHHTSTYQASLCKLIEYWSEQNVHYLFLLIFFVTFLITIYYFLTLQFKSCYKCTSRSTERE*