SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g44020

Feature Type:gene_model
Chromosome:Gm13
Start:43580634
stop:43581833
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g44020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52690AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein | chr1:19619842-19620589 FORWARD LENGTH=169 SoyBaseE_val: 7.00E-32ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009830GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23241Panther LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED JGI ISS
PTHR23241:SF34Panther LATE EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE / LE JGI ISS
UniRef100_Q9XET0UniRef Annotation by Michelle Graham. Best UniRef hit: Seed maturation protein PM30 n=1 Tax=Glycine max RepID=Q9XET0_SOYBN SoyBaseE_val: 9.00E-91ISS
UniRef100_Q9XET0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM30 n=1 Tax=Glycine max RepID=Q9XET0_SOYBN SoyBaseE_val: 9.00E-91ISS

Expression Patterns of Glyma13g44020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g44020
ParalogEvidenceComments
Glyma15g01320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g44020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g363300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g44020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g44020
>Glyma13g44020.1   sequence type=CDS   gene model=Glyma13g44020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCCATAGGCAAAGCTATGAAGCTGGTCAAACTAAGGGCCGAACTGAGGAAAAGACGAACCAGACGATGGGCAATATTGGAGAGAAGGCTCAAGCTGCAAAGGAGAAGACCCAGGAAATGGCCCAAGCTGCAAAGGAGAAGACCCAACAAACAGCCCAAGCTGCCAAGGACAAGACTTGCGACACTTCCCAAGCGGCAAAGGAGAAGACCCAACAGAATACAGGAGCTGCTCAACAAAAGACCTCAGAGATGGGCCAGTCCACGAAGGAATCGGCCCAGTCAGGGAAGGACAACACCCAAGGGTTCCTGCAGCAGACAGGGGAGAAGGTGAAGGGCGCAGCCCAAGGTGCTACAGAGGCTGTGAAGCAAACCCTTGGCTTGGGCGAGCATGATCAAGACAACCGCAGAAATTACTAA
Predicted protein sequences of Glyma13g44020
>Glyma13g44020.1   sequence type=predicted peptide   gene model=Glyma13g44020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASHRQSYEAGQTKGRTEEKTNQTMGNIGEKAQAAKEKTQEMAQAAKEKTQQTAQAAKDKTCDTSQAAKEKTQQNTGAAQQKTSEMGQSTKESAQSGKDNTQGFLQQTGEKVKGAAQGATEAVKQTLGLGEHDQDNRRNY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo