SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15660 | AT | Annotation by Michelle Graham. TAIR10: glutaredoxin 4 | chr3:5308134-5309383 REVERSE LENGTH=169 | SoyBase | E_val: 3.00E-73 | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0015035 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG1752 | KOG | Glutaredoxin and related proteins | JGI | ISS | |
| PTHR10293 | Panther | GLUTAREDOXIN | JGI | ISS | |
| PF00462 | PFAM | Glutaredoxin | JGI | ISS | |
| UniRef100_C6SXY3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXY3_SOYBN | SoyBase | E_val: 6.00E-117 | ISS |
| UniRef100_G7IMH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Monothiol glutaredoxin-S15 n=2 Tax=Medicago truncatula RepID=G7IMH4_MEDTR | SoyBase | E_val: 2.00E-92 | ISS |
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Glyma13g44000 not represented in the dataset |
Glyma13g44000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g01341 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g363100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g44000.2 sequence type=transcript gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTCAATTTGGTATTACTATTTATATGCCCGTCTACATGCATTGATTTTTGAGAAGTTGGTTATACGTATTGCATTGCTTTACTATGTTAATTACTGCTATAATTGATAGACTAGATGTTTTTGTTTCTCAAGTTGTAGGTCATGTTTTCCTTTTGTAACAGTATTTGTCTTCCTTTAATGTCTTCACAGCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATGATCCTGACACACATGATGACTTCAAGCCAGCTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGATCAGATATTGTTCTTAATATGCATCAGACGGGTGATTTGAAGGAAAAGCTTAAAGATATTACGTCCAAGCAGTAAAAGGACGAGTAATGTGATGAAATTCAAAGAGAGTGAGGTAGTTTAGACAAACTTATTTGATGTAATCTGTTTCTGTAGCTGAAAGATGTCCTTATGTAACTTCTTTGAACTAGATTTTCTGGATGGTATTAAGTTATTCGGCAAATAAAAAATTGTACTTTTAAGTTATTCCTTTCTATAAAATAAGATGTTTTTTTTGTGTGTGCATAC >Glyma13g44000.3 sequence type=transcript gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAGTTGGTATTTTAACCAAGTAAGTTGGAATGCCCTTTTAGTCTCGGAATCCATCGATCCAAAACCCTAATTGAAGTTGTCTTGTCTGCGTTCTCAAACGTTGTTGCTTGCTGCTGCTGCATAGTTGATCGAAAGCATGACAACATCATTGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATGATCCTGACACACATGATGACTTCAAGCCAGCTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGTGTGGTTAATGTGTGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGGTATGTTCATTTTTACTGGTTTTATTACTCTTGCTTCATAAGAGAGTACTCTATTTCTCTTACAGTGAGCACAATTTTTCAAAATTCACATTTGTGGTGGTAAATGAGCAGTTTCCAGTCAAAGGATATAAATAATAATATAGAGTTGTTGCTGATAATAATCAGATATGAAATGAAACATAAAATCATTATTTTCACATTGTATTGTGTAAATCCAAAAATTGTAGTTGGAATCAGATTTTGAATTATAAATCTTAAAAATAATTGTTCTGCTGTTCAAACTTTGAAATCAA
>Glyma13g44000.1 sequence type=CDS gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAACATCATTGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATGATCCTGACACACATGATGACTTCAAGCCAGCTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGATCAGATATTGTTCTTAATATGCATCAGACGGGTGATTTGAAGGAAAAGCTTAAAGATATTACGTCCAAGCAGTAA >Glyma13g44000.2 sequence type=CDS gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTCCTTTTGTAACAGTATTTGTCTTCCTTTAATGTCTTCACAGCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATGATCCTGACACACATGATGACTTCAAGCCAGCTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGATCAGATATTGTTCTTAATATGCATCAGACGGGTGATTTGAAGGAAAAGCTTAAAGATATTACGTCCAAGCAGTAA >Glyma13g44000.3 sequence type=CDS gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGGTATGTTCATTTTTACTGGTTTTATTACTCTTGCTTCATAAGAGAGTACTCTATTTCTCTTACAGTGAGCACAATTTTTCAAAATTCACATTTGTGGTGGTAA
>Glyma13g44000.1 sequence type=predicted peptide gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTSLSSILFKGIAARSFTAPLTRSCYHGMRYFATVSNDPDTHDDFKPANKLENSNISLADVIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVRVLQQYDVPLSARNILEDPELKNAVKAFSNWPTFPQVFIKGEFIGGSDIVLNMHQTGDLKEKLKDITSKQ* >Glyma13g44000.2 sequence type=predicted peptide gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSFCNSICLPLMSSQLTRSCYHGMRYFATVSNDPDTHDDFKPANKLENSNISLADVIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVRVLQQYDVPLSARNILEDPELKNAVKAFSNWPTFPQVFIKGEFIGGSDIVLNMHQTGDLKEKLKDITSKQ* >Glyma13g44000.3 sequence type=predicted peptide gene model=Glyma13g44000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIYMKGVPDFPQCGFSSLAVRVLQQYDVPLSARNILEDPELKNAVKAFRYVHFYWFYYSCFIREYSISLTVSTIFQNSHLWW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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