Glyma13g43990 - SoyBase

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Report for Sequence Feature Glyma13g43990

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43566806
stop:	43571948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52700	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:19631186-19633366 REVERSE LENGTH=255	SoyBase	E_val: 1.00E-140	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2112	KOG	Lysophospholipase	JGI		ISS
PTHR10655	Panther	LYSOPHOSPHOLIPASE-RELATED	JGI		ISS
PTHR10655:SF5	Panther	CARBOXYLESTERASE	JGI		ISS
PF02230	PFAM	Phospholipase/Carboxylesterase	JGI		ISS
UniRef100_G7IMH6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-protein thioesterase n=1 Tax=Medicago truncatula RepID=G7IMH6_MEDTR	SoyBase	E_val: 7.00E-163	ISS
UniRef100_I1M5R2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5R2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43990 not represented in the dataset	Glyma13g43990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43990

Paralog	Evidence	Comments
Glyma15g01350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g363000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g43990

Limit To All Plant Sequences

>Glyma13g43990.4   sequence type=transcript   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGCTGCAAAAATATCTGCACAACAACTTGGAGATGGAGAAACAGGAAAGCCATATAATTATATACCAATAAAAGAAGTTGGTCAGTGGGATATATTTAAGTTGGAGTCCACTAAGGCCCTTTCAAACAGAAAATAAAAAAACAAAAGATATAAAAAAATGAAAAACCTGCTAATTGTTTATCACATTGAAATTTGATAAACAATGGGCTTACGTGTGTTATGTTTCTTAAGATTCCTTTTGGAGAAGATCATGGCTTAAAATTTTCTATATATTTTTTTTCCTTCTAAAGAAGTTACCTGTCTGCTAAATAAATGAACATGTTAGAACGTTGTTTTTTCACCTAAATGTGTTAAAGAGAAGCTCCGCTACTTACTAGTATTATTTGTCATTATGCTTAAGACAAAGTCTAATCTATAGCCTTTGGACTTATGCTGTTTCTCATGTCATGTGTATAAACAAATAAAATTTTTCTTCAGGTGGGGTTTGAGCAACTAAAGTTTAGTGGCAAGCAAGCAAGACAACAAAAAAAGAAAGAACCTCTTCATACTCATTGCAGTTGCAGTACGTGCGGGGTGGGAGTGCTTTCAACACTTTCTCTTCAACCAGCAAAATGAGTCATGCACATTCTCATATGGGCTCAGGTAGTAGAACCACTCGAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGCTCATCTCAGCTCCTGGAATCCTTGCCACTTCCAAATATAAAATGGATTTGCCCTACTGCTCCTACCCGTCCTGTGGCGATACTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCCATAGCCCTGTACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATACCATACCCTCTAAACTTAAGAACAGTGGTTGGACTAAGTGGTTGGCTTCCCGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAGGCAAGAAGGCGAGCAGCTTCATTACCCATTTTGCTGTGCCATGGAATCAGTGATGATGTAGTCCTTTACAAATACGGAGAAAAATCTGCTCAATCCTTATGTTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGATGGGCTTGGTCATTACACGGTTCCTAGAGAGATGGATGAGGTTTGCACTTGGTTTAGTTCAAGATTGGGACTTGATGGGTCCTCGTAAGTGACATAATTAGTATCAGTCAGGGCATGGGCGTAGAAGGTATATGGAACAATAACAGGGAAAGTGGGGAGATGCATAATGCACAAATAGGTAGATCATGGAAAGGTTCAAGCGTATATATATAAATAGGAGGATTTATTTTCTGGGTCCCTTTTTTTGTCATGTTCCTCAGCAATAAAGATCTGCATGTGTTTTCTAAGTATTCTCCTCGTTATGTTTTTTTTTGGTGAAATTTTCCTTGGTATGTTATTGTAGAACCTAGGGACTGGATTAGTTGTACGATGGAAGAGATTTTTAGTTATTATTATTCTAACAAAGCACGCACCTTAGCCTCCTTATTTCTCATAAGAATGTCAATAGGGATGGAAATGAACCAAACA

>Glyma13g43990.5   sequence type=transcript   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATGTGTATAAACAAATAAAATTTTTCTTCAGGTGGGGTTTGAGCAACTAAAGTTTAGTGGCAAGCAAGCAAGACAACAAAAAAAGAAAGTAATATTCTTCTGTGGTTGCTTTATTTCCTGGCCACTTCCCACAAGCATAGATTCTCTCTATGTGAGAGTCCTCTCTCCTAGCTGTGCAGCTTAGGAATGGATGATTAATTGTGCTCTGCTCTGCTTTGCTTTGATTCTCTCTGCTCATAAAGAACCTCTTCATACTCATTGCAGTTGCAGTACGTGCGGGGTGGGAGTGCTTTCAACACTTTCTCTTCAACCAGCAAAATGAGTCATGCACATTCTCATATGGGCTCAGGTAGTAGAACCACTCGAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGCTCATCTCAGCTCCTGGAATCCTTGCCACTTCCAAATATAAAATGGATTTGCCCTACTGCTCCTACCCGTCCTGTGGCGATACTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCCATAGCCCTGTACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATACCATACCCTCTAAACTTAAGAACAGTGGTTGGACTAAGTGGTTGGCTTCCCGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAGGCAAGAAGGCGAGCAGCTTCATTACCCATTTTGCTGTGCCATGGAATCAGTGATGATGTAGTCCTTTACAAATACGGAGAAAAATCTGCTCAATCCTTATGTTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGATGGGCTTGGTCATTACACGGTTCCTAGAGAGATGGATGAGGTTTGCACTTGGTTTAGTTCAAGATTGGGACTTGATGGGTCCTCGTAAGTGACATAATTAGTATCAGTCAGGGCATGGGCGTAGAAGGTATATGGAACAATAACAGGGAAAGTGGGGAGATGCATAATGCACAAATAGGTAGATCATGGAAAGGTTCAAGCGTATATATATAAATAGGAGGATTTATTTTCTGGGTCCCTTTTTTTGTCATGTTCCTCAGCAATAAAGATCTGCATGTGTTTTCT

Coding sequences of Glyma13g43990

Limit To All Plant Sequences

>Glyma13g43990.3   sequence type=CDS   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCATGCACATTCTCATATGGGCTCAGGTAGTAGAACCACTCGAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGCTCATCTCAGCTCCTGGAATCCTTGCCACTTCCAAATATAAAATGGATTTGCCCTACTGCTCCTACCCGTCCTGTGGCGATACTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCCATAGCCCTGTACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATACCATACCCTCTAAACTTAAGAACAGTGGTTGGACTAAGTGGTTGGCTTCCCGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAGGCAAGAAGGCGAGCAGCTTCATTACCCATTTTGCTGTGCCATGGAATCAGTGATGATGTAGTCCTTTACAAATACGGAGAAAAATCTGCTCAATCCTTATGTTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGATGGGCTTGGTCATTACACGGTTCCTAGAGAGATGGATGAGGTTTGCACTTGGTTTAGTTCAAGATTGGGACTTGATGGGTCCTCGTAA

>Glyma13g43990.4   sequence type=CDS   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCATGCACATTCTCATATGGGCTCAGGTAGTAGAACCACTCGAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGCTCATCTCAGCTCCTGGAATCCTTGCCACTTCCAAATATAAAATGGATTTGCCCTACTGCTCCTACCCGTCCTGTGGCGATACTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCCATAGCCCTGTACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATACCATACCCTCTAAACTTAAGAACAGTGGTTGGACTAAGTGGTTGGCTTCCCGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAGGCAAGAAGGCGAGCAGCTTCATTACCCATTTTGCTGTGCCATGGAATCAGTGATGATGTAGTCCTTTACAAATACGGAGAAAAATCTGCTCAATCCTTATGTTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGATGGGCTTGGTCATTACACGGTTCCTAGAGAGATGGATGAGGTTTGCACTTGGTTTAGTTCAAGATTGGGACTTGATGGGTCCTCGTAA

>Glyma13g43990.5   sequence type=CDS   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCATGCACATTCTCATATGGGCTCAGGTAGTAGAACCACTCGAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGCTCATCTCAGCTCCTGGAATCCTTGCCACTTCCAAATATAAAATGGATTTGCCCTACTGCTCCTACCCGTCCTGTGGCGATACTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCCATAGCCCTGTACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATACCATACCCTCTAAACTTAAGAACAGTGGTTGGACTAAGTGGTTGGCTTCCCGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAGGCAAGAAGGCGAGCAGCTTCATTACCCATTTTGCTGTGCCATGGAATCAGTGATGATGTAGTCCTTTACAAATACGGAGAAAAATCTGCTCAATCCTTATGTTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGATGGGCTTGGTCATTACACGGTTCCTAGAGAGATGGATGAGGTTTGCACTTGGTTTAGTTCAAGATTGGGACTTGATGGGTCCTCGTAA

Predicted protein sequences of Glyma13g43990

Limit To All Plant Sequences

>Glyma13g43990.3   sequence type=predicted peptide   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHAHSHMGSGSRTTRRAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLPLPNIKWICPTAPTRPVAILGGFPCTAWFDVGELSEDGPDDWEGLDTSAAHIANLLSTEPADVKVGIGGFSMGAAIALYSATCFAMGRYGNGIPYPLNLRTVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPILLCHGISDDVVLYKYGEKSAQSLCSAGFRYVAFKSYDGLGHYTVPREMDEVCTWFSSRLGLDGSS*

>Glyma13g43990.4   sequence type=predicted peptide   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHAHSHMGSGSRTTRRAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLPLPNIKWICPTAPTRPVAILGGFPCTAWFDVGELSEDGPDDWEGLDTSAAHIANLLSTEPADVKVGIGGFSMGAAIALYSATCFAMGRYGNGIPYPLNLRTVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPILLCHGISDDVVLYKYGEKSAQSLCSAGFRYVAFKSYDGLGHYTVPREMDEVCTWFSSRLGLDGSS*

>Glyma13g43990.5   sequence type=predicted peptide   gene model=Glyma13g43990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHAHSHMGSGSRTTRRAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLPLPNIKWICPTAPTRPVAILGGFPCTAWFDVGELSEDGPDDWEGLDTSAAHIANLLSTEPADVKVGIGGFSMGAAIALYSATCFAMGRYGNGIPYPLNLRTVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPILLCHGISDDVVLYKYGEKSAQSLCSAGFRYVAFKSYDGLGHYTVPREMDEVCTWFSSRLGLDGSS*

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