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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma13g43930

Feature Type:gene_model
Chromosome:Gm13
Start:43488540
stop:43493553
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80280AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:30183839-30186141 REVERSE LENGTH=647 SoyBaseE_val: 0ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG1454 KOG Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) JGI ISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF149Panther HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN JGI ISS
PF00561PFAM alpha/beta hydrolase fold JGI ISS
UniRef100_G7IMG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase n=2 Tax=Medicago truncatula RepID=G7IMG6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M5Q5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5Q5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43930 not represented in the dataset

Glyma13g43930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g01410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g362400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g43930.1   sequence type=CDS   gene model=Glyma13g43930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCCGCTAGGGGAGGGCAGTGCTTGGAGAAGCTTCGGAGGTTTGTTCGGACGGTATTCTTCGTGGCGGCATTGGTGGCGTCGCTGCTTGTGACGTCGCTGCCGGTGCTCGTCGCCGTTGTGGACGTGCTCGTCCCTTGCGTTTTGATTTCGAGCTTCTCATGCGTCAAGTGCTACGGCTTCAAGGAGCATTTACGACGTTACGCTTTCAAGAGCTCCTTGACGGATATTCCTCTCGTTTCGGTCATAAGATCCTTCATCATTATCTGTGTTTATTCCATTTGTGATGGTCCTGCTCTATCACATGGTCCTTACCTTGGAACTGTGACTCTGTCTTCCTTTGTTTCAATTGTTCTCCTTTCAGTCAAAGCTTGTGTTTTCACTGTAAATTCCCAGATTGAAGCAGAAGCTACGGTTTCCCCTACAAGGCAGAGACTTCATTTAAAGAAGTCATGGGGAATGCCTGTCTTGTTCCTCTCGTCAGTTGCGTTTGCTCTAGGCCATATTGTGGTTGCCTACAGAACCAGCTTTAGAGCAAGGAGGAAACTCATGTTTCATCGAGTTGACCCTGAAGCGGTCCTTTCATGCAAAAATGTTTTTACTGGCTATCAGAAGGTCCCTCGGTCTCCTGTTCCCTCTGAGGGGAGAACCCCAAAAAGTGACAGTGAAATGAAAAGGAGGCCTTTTGGAGCAGCTCATGATGAAGAACTGCCAATCAGAATACTTGCAGACCCGGAGAGCTTATTCATCCCCTGCCAAGGTCTTACTCTCCATTACAAGCTCAGCCTACCTGGTTCACCTCCACTTAACATATCCTCAGCATTTTGCTCCACTTCATCAATGGCTGGGGGGTTGTCAAAATTAAATAGACAATTGACTTTTATACCTCCAAAAGTCCATCAGCAACTCTACAGGAGCTATAGCAATCAATTCCATGGCTCATCTTTGTATGCTCCTCTTTTAGATGGTCCAGTAACTTCTCCCCATCTTACTGAAGATATCCCTGTTTTGCATCTAGATGAAATTCATGAAGATGAGGAAACATATAAATCAGAGTTGGAGCAAAATTCAGAGGACATTGGCCAAGTAGGTATTGTTTTAATACATGGGTTTGGTGGAGGTGTCTTCTCTTGGCGACATGTAATGGGACCTCTAGCTCGGCAGAGTAATTGCACAGTTGCTGCATTTGATAGGCCTGGTTGGGGATTGACTTCAAGACTGAGTCAGGAGGACTGGGAGAAAAAAGAACTGCCTAATCCTTATAAACTTGAAAGTCAGGTTGATCTGCTTTTGTCTTTCTGTTCCGAGATTGGATTTTCTTCAGTTGTGCTAATTGGTCATGATGATGGAGGGTTGCTTGCTCTGATGGCTGCAAAGAGGGTTCAAACATCAATGAATTCTTTCAACGTTACAGTGAAAGGGGTTGTATTGTTAAATGTTAGCTTGTCAAGGGAAGTAGTTCCATCCTTTGCTAGAATCCTTCTGCATACTTCACTTGGAAAGAAACATTTGGTTCGTCCACTACTAAGAACAGAAATCACCCACGTGGTGAATCGGCGTTCGTGGTATGATGCTACCAAACTGACAACAGAAGTTTTGACTCTATATAAGGCTCCACTATATGTAGAAGGATGGGATGAAGCACTGCACGAGATTGGTAAATTGTCATCGGAAACCTTCCTTTCTGCAATAAATGCAGACTTGTTGCTACAAGCTGTAAAAGACATTCCCGTGTTGGTCATAGCCGGTGCTGAAGATTCACTTGTCTCAATGAAATATTGTCAAGCAATGGCCTGCAAATTTGTAAATTCTAGACTGGTTGCAATATCCGGATGTGGCCATCTACCCCACGAGGAGTGTCCAAAGGCGTTGCTTGAGGCTATATCACCCTTCATTAATAAACTCTTCTTCTCTGTATATAAGTCGCAAAGCAAATAG

>Glyma13g43930.1   sequence type=predicted peptide   gene model=Glyma13g43930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMAARGGQCLEKLRRFVRTVFFVAALVASLLVTSLPVLVAVVDVLVPCVLISSFSCVKCYGFKEHLRRYAFKSSLTDIPLVSVIRSFIIICVYSICDGPALSHGPYLGTVTLSSFVSIVLLSVKACVFTVNSQIEAEATVSPTRQRLHLKKSWGMPVLFLSSVAFALGHIVVAYRTSFRARRKLMFHRVDPEAVLSCKNVFTGYQKVPRSPVPSEGRTPKSDSEMKRRPFGAAHDEELPIRILADPESLFIPCQGLTLHYKLSLPGSPPLNISSAFCSTSSMAGGLSKLNRQLTFIPPKVHQQLYRSYSNQFHGSSLYAPLLDGPVTSPHLTEDIPVLHLDEIHEDEETYKSELEQNSEDIGQVGIVLIHGFGGGVFSWRHVMGPLARQSNCTVAAFDRPGWGLTSRLSQEDWEKKELPNPYKLESQVDLLLSFCSEIGFSSVVLIGHDDGGLLALMAAKRVQTSMNSFNVTVKGVVLLNVSLSREVVPSFARILLHTSLGKKHLVRPLLRTEITHVVNRRSWYDATKLTTEVLTLYKAPLYVEGWDEALHEIGKLSSETFLSAINADLLLQAVKDIPVLVIAGAEDSLVSMKYCQAMACKFVNSRLVAISGCGHLPHEECPKALLEAISPFINKLFFSVYKSQSK*







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