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Report for Sequence Feature Glyma13g43800

Feature Type:gene_model
Chromosome:Gm13
Start:43396690
stop:43398891
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g43800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04250AT Annotation by Michelle Graham. TAIR10: AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229 SoyBaseE_val: 8.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008180GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signalosome SoyBaseN/AISS
GO:0019005GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_C6T1W6UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T1W6_SOYBN SoyBaseE_val: 3.00E-132ISS
UniRef100_F8J145UniRef Annotation by Michelle Graham. Most informative UniRef hit: AUX/IAA-like protein (Fragment) n=1 Tax=Pelargonium x hortorum RepID=F8J145_PELHO SoyBaseE_val: 8.00E-73ISS

Expression Patterns of Glyma13g43800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43800
ParalogEvidenceComments
Glyma15g01550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g361200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g43800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g43800
>Glyma13g43800.2   sequence type=transcript   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAAAAAGAAAATCCTACGTGCAGTGCAAAATTTATGATACGTACAGTTTAATTAACATGTGAAACAATAATAACTGATTTATTACATTATAAAAATTAGTTCAGGCTCCGAAAGTCTTGTCTTACAACATCATGGCACCATCCATTCTCTAATTGTATCCACAGTAGAGAAGTTTGAAGATAATTGAGTATGACAATACAGTCTTGTCCACGAGTTTCTTTATCACACGATTTGGATAATACCAGGGAATTGTTATTTACATGATTATTTAGTGTCTAAAAACATTTTAAACAGTAATAATTAAGTATAAAGTTGGATAAATTGCGTGGTGATTACGTGGAACGTTCCTGTTAGCTAGTGAGAGCTAGCAGGAAGGAAGAATGAAAGGAGAAATTTGATTCGAAACAAAGTTGAAAACAATCGAATCAGAATGACACGCTTAGCTCATACATACGTGGAAGAATCAAAGCCGGTGTTTAAGGTAGACGTGTCATTAATTGGAAGGTCCAACAACCTCGCAGGTCATACGCAGCATAATATAAGCACGCACGTTGCCGAAGAAAATACCACTACTCCTCCTAAGTCTTTGAAGTCATAAAGACAAAAGAAAAGACTTAGTCATAGCAGCAAACAAGGAAAGGCACGTACACGACCACCGTTTACCTGTTTTTTGAACGTTGAAATTAATTGACCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCCAATCTGACGCCGTTGGCTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTAATGGCACAAAACGTGGCTTCTCCGACACCCTTAACACTTCTCATAATAAAATGTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACCTAGCTAGCTAGAAGAATAATTAATTAGTGCGTAATAATGATAAGCTGATAGCTGATAATTAAGCATTCCTTGGACACCTTCAACGTTTACAAGCTCCGGTTAGAAGAAGAGTGAATTTGGTACAGGGAAATATCCATGCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAATTAGTTACTTTTGTTTTGACTTTAAATGAAGAACTAGAACAAATACTGGTCTCTATATTAGCTAGTGATCTAAAAAACAAATAAGGGGAGGCTGGCATGTAATCAATATTAGGATCATCGTTATATCATGAGTATGCATGTAATGTATGACTTGGCTTTGTGCTAGCTAGTTATTCTACCCCCAGTTTTCTAGTTGTTAGATAAATTCACCTGATCATTTTATGTTTCATTTCATAATTCATAATATTTCTATACTAGCTCGCTCCTGAATTTTTATAGGTTAATATAACATCAGGATATACTTTAAATCTATTCTTATTCTTCACTTTTAATG

>Glyma13g43800.3   sequence type=transcript   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAAAAAGAAAATCCTACGTGCAGTGCAAAATTTATGATACGTACAGTTTAATTAACATGTGAAACAATAATAACTGATTTATTACATTATAAAAATTAGTTCAGGCTCCGAAAGTCTTGTCTTACAACATCATGGCACCATCCATTCTCTAATTGTATCCACAGTAGAGAAGTTTGAAGATAATTGAGTATGACAATACAGTCTTGTCCACGAGTTTCTTTATCACACGATTTGGATAATACCAGGGAATTGTTATTTACATGATTATTTAGTGTCTAAAAACATTTTAAACAGTAATAATTAAGTATAAAGTTGGATAAATTGCGTGGTGATTACGTGGAACGTTCCTGTTAGCTAGTGAGAGCTAGCAGGAAGGAAGAATGAAAGGAGAAATTTGATTCGAAACAAAGTTGAAAACAATCGAATCAGAATGACACGCTTAGCTCATACATACGTGGAAGAATCAAAGCCGGTGTTTAAGGTAGACGTGTCATTAATTGGAAGGTCCAACAACCTCGCAGGTCATACGCAGCATAATATAAGCACGCACGTTGCCGAAGAAAATACCACTACTCCTCCTAAGTCTTTGAAGTCATAAAGACAAAAGAAAAGACTTAGTCATAGCAGCAAACAAGGAAAGGCACGTACACGACCACCGTTTACCTGTTTTTTGAACGTTGAAATTAATTGACCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCCAATCTGACGCCGTTGGCTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTAATGGCACAAAACGTGGCTTCTCCGACACCCTTAACACTTCTCATAATAAAATGTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACCTAGCTAGCTAGAAGAATAATTAATTAGTGCGTAATAATGATAAGCTGATAGCTGATAATTAAGCATTCCTTGGACACCTTCAACGTTTACAAGCTCCGGTTAGAAGAAGAGTGAATTTGGTACAGGGAAATATCCATGCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAATTAGTTACTTTTGTTTTGACTTTAAATGAAGAACTAGAACAAATACTGGTCTCTATATTAGCTAGTGATCTAAAAAACAAATAAGGGGAGGCTGGCATGTAATCAATATTAGGATCATCGTTATATCATGAGTATGCATGTAATGTATGACTTGGCTTTGTGCTAGCTAGTTATTCTACCCCCAGTTTTCTAGTTGTTAGATAAATTCACCTGATCATTTTATGTTTCATTTCATAATTCATAATATTTCTATACTAGCTCGCTCCTGAATTTTTATAGGTTAATATAACATCAGGATATACTTTAAATCTATTCTTATTCTTCACTTTTAATG

>Glyma13g43800.4   sequence type=transcript   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAATTGTTAATTAATATGTATGTTGCAGGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACCTAGCTAGCTAGAAGAATAATTAATTAGTGCGTAATAATGATAAGCTGATAGCTGATAATTAAGCATTCCTTGGACACCTTCAACGTTTACAAGCTCCGGTTAGAAGAAGAGTGAATTTGGTACAGGGAAATATCCATGCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAATTAGTTACTTTTGTTTTGACTTTAAATGAAGAACTAGAACAAATACTGGTCTCTATATTAGCTAGTGATCTAAAAAACAAATAAGGGGAGGCTGGCATGTAATCAATATTAGGATCATCGTTATATCATGAGTATGCATGTAATGTATGACTTGGCTTTGTGCTAGCTAGTTATTCTACCCCCAGTTTTCTAGTTGTTAGATAAATTCACCTGATCATTTTATGTTTCATTTCATAATTCATAATATTTCTATACTAGCTCGCTCCTGAATTTTTATAGGTTAATATAACATCAGGATATACTTTAAATCTATTCTTATTCTTCACTTTTAATG
Coding sequences of Glyma13g43800
>Glyma13g43800.1   sequence type=CDS   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCCAATCTGACGCCGTTGGCTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTAATGGCACAAAACGTGGCTTCTCCGACACCCTTAACACTTCTCATAATAAAATGTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTAA

>Glyma13g43800.2   sequence type=CDS   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCCAATCTGACGCCGTTGGCTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTAATGGCACAAAACGTGGCTTCTCCGACACCCTTAACACTTCTCATAATAAAATGTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACCTAG

>Glyma13g43800.3   sequence type=CDS   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCCAATCTGACGCCGTTGGCTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTAATGGCACAAAACGTGGCTTCTCCGACACCCTTAACACTTCTCATAATAAAATGTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTAA

>Glyma13g43800.4   sequence type=CDS   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACCTAG
Predicted protein sequences of Glyma13g43800
>Glyma13g43800.1   sequence type=predicted peptide   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQSDAVGCNLKETELTLGLPGTKTNGTKRGFSDTLNTSHNKMLRPTSKEQVVGWPPVRASRKNAMKMSCKLVKVAVDGAPYLRKVDLEMYETYEHLMRELETMFCGLAIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWK*

>Glyma13g43800.2   sequence type=predicted peptide   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQSDAVGCNLKETELTLGLPGTKTNGTKRGFSDTLNTSHNKMLRPTSKEQVVGWPPVRASRKNAMKMSCKLVKVAVDGAPYLRKVDLEMYETYEHLMRELETMFCGLAIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST*

>Glyma13g43800.3   sequence type=predicted peptide   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQSDAVGCNLKETELTLGLPGTKTNGTKRGFSDTLNTSHNKMLRPTSKEQVVGWPPVRASRKNAMKMSCKLVKVAVDGAPYLRKVDLEMYETYEHLMRELETMFCGLAIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWK*

>Glyma13g43800.4   sequence type=predicted peptide   gene model=Glyma13g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMSCKLVKVAVDGAPYLRKVDLEMYETYEHLMRELETMFCGLAIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST*






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