Glyma13g43750 - SoyBase

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Report for Sequence Feature Glyma13g43750

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43353450
stop:	43357732
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80420	AT	Annotation by Michelle Graham. TAIR10: BRCT domain-containing DNA repair protein \| chr1:30235444-30237163 REVERSE LENGTH=353	SoyBase	E_val: 3.00E-116	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
PTHR11370	Panther	DNA-REPAIR PROTEIN XRCC1	JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
UniRef100_G7IMD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein XRCC1 n=1 Tax=Medicago truncatula RepID=G7IMD2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M5N0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5N0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43750

Paralog	Evidence	Comments
Glyma15g01590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g360800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g43750

Limit To All Plant Sequences

>Glyma13g43750.2   sequence type=transcript   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATGCCCGATAACCACTCCGGCACGTCCACCAACATGTTCCTTCTGTCACAGTTTTTATAAATATCTATGTTGGCTTACTGCTGTTTCCTTTCGGCACCACCTCCAGTACTTACACAGCACAGAAACAAACCGAACACATCAGACGCAGCAGCAAAAGTTTCTCCACTAAAACTTGGGCGATTTTCAAATTTGGTACTTTGGCACCCTTCACATAGTAGTTCTCACCATGTCCGATACTAAAAGAAGTGCCAACAACAGCGGTTCCAAGCGGAGCCTGCCATCGTGGACGAATTCAAGGGAAAATGAGAGCGATAACAGTGCAAAGAAACCAACTTTGGATGGCCAAGGTGAGAAATCCAGTGACGCTGAGACACCCAACAAGAGCAAAGTCCAAAATGAAAATGGTGGAAATGCCTCAAGTTTGGAATCTAAAAGCTTCAACAAGCTTCTGGAAGGGGTGGTTTTTGTGCTTTCAGGGTTTGTGAATCCGGAGAGGGGCATGTTGAGGTCACGAGCTATGGAAATGGGAGCAGAATATAAGCCTGATTGGAACTCTGATTGCACTCTCTTGGTTTGTGCTTTTCCAAATACCCCTAAGTTTAGACAAGTTGAAGCTGATTGTGGAACCATCGTGTCCAAGGATTGGATAATAGAGTGTTACACACAGAGGAAGCTGATTGAAATTGACAGTTACCTTTTACATGCTGGGAAACCATGGCGCAAAGGAAATGGATCACTTGAAGTAAATGAAGATAAGAAACCATCTGTACCCAAAAAATTATTGAAGCACGTTGAAAGAGAACAGCCTTCAGCATCAACTGCCTCCATAAAATCAAAGGGAAAAGACACTGATGTTGCTAGGAAATGCTTTGAGCCTTCGGAAGTGAAAAAGTGGGCCATTGATGATTTGAATAAAACAATTCAGTGGCTGGAAAGTCAAGAAGAAAAGGTTATGATCTTCCATTCCTGTATAAAAGACTGTTTCTGTTCATTCTGGAGGTTACAATTTTCTTATTTGCATTCAGAACTTGCATAGAATCAGACTAAAGTGCAAAAAAAGAGGTTTGCATTGGAATCAAATTCACTTGTTAGAAAAGCTTAGTATATCTGTTGTTCCCAATTACTTGTGCTTAAGGTTGATAGTTGTACTGTATATGAATCTAAACATCATGTTAATCATTTCAGCCTGATCCAGGTGAGTTGACAAAAATAGCTGCAGAGGGGATTCTAACTTGTTTGCAAGATGCAATATGTTCTCTAGAGGAAAAACAGGACATCCGGAAAGGAACTGAGGACTGGATGTTCTTACCTCGTGTTGTTGAGGAGCTTGCAAAGTTTGATGTAGTAGGAAACAAGGGCTCATTGTCAAAGGAAGATCTTCGAAGACAGGCTTTGGATTGTAAACGTATTTATGAGGAGGAACTAAATAGTTTAGATCATGAAAGGAAAAAGAATTCAAAGGTAAATAAAGAACAGAGGAGCAAAACTGGAAGAACAAATGCCATGTCTTCTGGTGCAGTTGAGTATGATAGTGATGAGACAATTGAGATGACTGAACAAGAAATAGATATTGCATATAAGGCTTTGTCCTCTAATATCTGCCACTTGTGATTTGTGATGATTGAACTTGTTACTTTAGGGATAAAAATGAGTTGTTTTGGTTCACCTAGATTTTTCTTTGGATCATTCTACGGTGTATATAACAAAGAAAGAAAAAGCCCGAGTGTGTTAGACTGGCCTCCTTTTGAAAGTGCATAACTCACGCGGTCTTTGTTAGCCTTAGATATTGACCTGTTTTACTGCTTCCATTCATATTACTTGAGAGTCCAA

>Glyma13g43750.3   sequence type=transcript   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGATTAAATTTGTCTATTAGTTTTTATTCATTTATTGTTATTTATCTCAATGAGCACACGCCACACGATCCTCAGATGAAGTTTTTGATCAATTTACGAAATTCATTTAGAACCCAAATGCAGGTTTCTCCACTAAAACTTGGGCGATTTTCAAATTTGGTACTTTGGCACCCTTCACATAGTAGTTCTCACCATGTCCGATACTAAAAGAAGTGCCAACAACAGCGGTTCCAAGCGGAGCCTGCCATCGTGGACGAATTCAAGGGAAAATGAGAGCGATAACAGTGCAAAGAAACCAACTTTGGATGGCCAAGGTGAGAAATCCAGTGACGCTGAGACACCCAACAAGAGCAAAGTCCAAAATGAAAATGGTGGAAATGCCTCAAGTTTGGAATCTAAAAGCTTCAACAAGCTTCTGGAAGGGGTGGTTTTTGTGCTTTCAGGGTTTGTGAATCCGGAGAGGGGCATGTTGAGGTCACGAGCTATGGAAATGGGAGCAGAATATAAGCCTGATTGGAACTCTGATTGCACTCTCTTGGTTTGTGCTTTTCCAAATACCCCTAAGTTTAGACAAGTTGAAGCTGATTGTGGAACCATCGTGTCCAAGGATTGGATAATAGAGTGTTACACACAGAGGAAGCTGATTGAAATTGACAGTTACCTTTTACATGCTGGGAAACCATGGCGCAAAGGAAATGGATCACTTGAAGTAAATGAAGATAAGAAACCATCTGTACCCAAAAAATTATTGAAGCACGTTGAAAGAGAACAGCCTTCAGCATCAACTGCCTCCATAAAATCAAAGGGAAAAGACACTGATGTTGCTAGGAAATGCTTTGAGCCTTCGGAAGTGAAAAAGTGGGCCATTGATGATTTGAATAAAACAATTCAGTGGCTGGAAAGTCAAGAAGAAAAGCCTGATCCAGGTGAGTTGACAAAAATAGCTGCAGAGGGGATTCTAACTTGTTTGCAAGATGCAATATGTTCTCTAGAGGAAAAACAGGACATCCGGAAAGGAACTGAGGACTGGATGTTCTTACCTCGTGTTGTTGAGGAGCTTGCAAAGTTTGATGTAGTAGGAAACAAGGGCTCATTGTCAAAGGAAGATCTTCGAAGACAGGCTTTGGATTGTAAACGTATTTATGAGGAGGAACTAAATAGTTTAGATCATGAAAGGAAAAAGAATTCAAAGGTAAATAAAGAACAGAGGAGCAAAACTGGAAGAACAAATGCCATGTCTTCTGGTGCAGTTGAGTATGATAGTGATGAGACAATTGAGATGACTGAACAAGAAATAGATATTGCATATAAGGCTTTGTCCTCTAATATCTGCCACTTGTGATTTGTGATGATTGAACTTGTTACTTTAGGGATAAAAATGAGTTGTTTTGGTTCACCTAGATTTTTCTTTGGATCATTCTACGGTGTATATAACAAAGAAAGAAAAAGCCCGAGTGTGTTAGACTGGCCTCCTTTTGAAAGTGCATAACTCACGCGGTCTTTGTTAGCCTTAGATATTGACCTGTTTTACTGCTTCCATTCATATTACTTGAGAGTCCAAATAAACAATTATTTTGTGAAACCCTTTAGTCCAGGCCAACTAAAGACCATGATAATTGATAAATTCCCCAAAGCTCAGTTGCCACTATTGAGCATCCTTCCAATTTTGTCGCAAAACAAACTAAGGTGTCATTCT

Coding sequences of Glyma13g43750

Limit To All Plant Sequences

>Glyma13g43750.1   sequence type=CDS   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGATACTAAAAGAAGTGCCAACAACAGCGGTTCCAAGCGGAGCCTGCCATCGTGGACGAATTCAAGGGAAAATGAGAGCGATAACAGTGCAAAGAAACCAACTTTGGATGGCCAAGGTGAGAAATCCAGTGACGCTGAGACACCCAACAAGAGCAAAGTCCAAAATGAAAATGGTGGAAATGCCTCAAGTTTGGAATCTAAAAGCTTCAACAAGCTTCTGGAAGGGGTGGTTTTTGTGCTTTCAGGGTTTGTGAATCCGGAGAGGGGCATGTTGAGGTCACGAGCTATGGAAATGGGAGCAGAATATAAGCCTGATTGGAACTCTGATTGCACTCTCTTGGTTTGTGCTTTTCCAAATACCCCTAAGTTTAGACAAGTTGAAGCTGATTGTGGAACCATCGTGTCCAAGGATTGGATAATAGAGTGTTACACACAGAGGAAGCTGATTGAAATTGACAGTTACCTTTTACATGCTGGGAAACCATGGCGCAAAGGAAATGGATCACTTGAAGTAAATGAAGATAAGAAACCATCTGTACCCAAAAAATTATTGAAGCACGTTGAAAGAGAACAGCCTTCAGCATCAACTGCCTCCATAAAATCAAAGGGAAAAGACACTGATGTTGCTAGGAAATGCTTTGAGCCTTCGGAAGTGAAAAAGTGGGCCATTGATGATTTGAATAAAACAATTCAGTGGCTGGAAAGTCAAGAAGAAAAGCCTGATCCAGGTGAGTTGACAAAAATAGCTGCAGAGGGGATTCTAACTTGTTTGCAAGATGCAATATGTTCTCTAGAGGAAAAACAGGACATCCGGAAAGGAACTGAGGACTGGATGTTCTTACCTCGTGTTGTTGAGGAGCTTGCAAAGTTTGATGTAGTAGGAAACAAGGGCTCATTGTCAAAGGAAGATCTTCGAAGACAGGCTTTGGATTGTAAACGTATTTATGAGGAGGAACTAAATAGTTTAGATCATGAAAGGAAAAAGAATTCAAAGGTAAATAAAGAACAGAGGAGCAAAACTGGAAGAACAAATGCCATGTCTTCTGGTGCAGTTGAGTATGATAGTGATGAGACAATTGAGATGACTGAACAAGAAATAGATATTGCATATAAGGCTTTGTCCTCTAATATCTGCCACTTGTGA

>Glyma13g43750.2   sequence type=CDS   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGATACTAAAAGAAGTGCCAACAACAGCGGTTCCAAGCGGAGCCTGCCATCGTGGACGAATTCAAGGGAAAATGAGAGCGATAACAGTGCAAAGAAACCAACTTTGGATGGCCAAGGTGAGAAATCCAGTGACGCTGAGACACCCAACAAGAGCAAAGTCCAAAATGAAAATGGTGGAAATGCCTCAAGTTTGGAATCTAAAAGCTTCAACAAGCTTCTGGAAGGGGTGGTTTTTGTGCTTTCAGGGTTTGTGAATCCGGAGAGGGGCATGTTGAGGTCACGAGCTATGGAAATGGGAGCAGAATATAAGCCTGATTGGAACTCTGATTGCACTCTCTTGGTTTGTGCTTTTCCAAATACCCCTAAGTTTAGACAAGTTGAAGCTGATTGTGGAACCATCGTGTCCAAGGATTGGATAATAGAGTGTTACACACAGAGGAAGCTGATTGAAATTGACAGTTACCTTTTACATGCTGGGAAACCATGGCGCAAAGGAAATGGATCACTTGAAGTAAATGAAGATAAGAAACCATCTGTACCCAAAAAATTATTGAAGCACGTTGAAAGAGAACAGCCTTCAGCATCAACTGCCTCCATAAAATCAAAGGGAAAAGACACTGATGTTGCTAGGAAATGCTTTGAGCCTTCGGAAGTGAAAAAGTGGGCCATTGATGATTTGAATAAAACAATTCAGTGGCTGGAAAGTCAAGAAGAAAAGGTTATGATCTTCCATTCCTGTATAAAAGACTGTTTCTGTTCATTCTGGAGGTTACAATTTTCTTATTTGCATTCAGAACTTGCATAG

>Glyma13g43750.3   sequence type=CDS   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGATACTAAAAGAAGTGCCAACAACAGCGGTTCCAAGCGGAGCCTGCCATCGTGGACGAATTCAAGGGAAAATGAGAGCGATAACAGTGCAAAGAAACCAACTTTGGATGGCCAAGGTGAGAAATCCAGTGACGCTGAGACACCCAACAAGAGCAAAGTCCAAAATGAAAATGGTGGAAATGCCTCAAGTTTGGAATCTAAAAGCTTCAACAAGCTTCTGGAAGGGGTGGTTTTTGTGCTTTCAGGGTTTGTGAATCCGGAGAGGGGCATGTTGAGGTCACGAGCTATGGAAATGGGAGCAGAATATAAGCCTGATTGGAACTCTGATTGCACTCTCTTGGTTTGTGCTTTTCCAAATACCCCTAAGTTTAGACAAGTTGAAGCTGATTGTGGAACCATCGTGTCCAAGGATTGGATAATAGAGTGTTACACACAGAGGAAGCTGATTGAAATTGACAGTTACCTTTTACATGCTGGGAAACCATGGCGCAAAGGAAATGGATCACTTGAAGTAAATGAAGATAAGAAACCATCTGTACCCAAAAAATTATTGAAGCACGTTGAAAGAGAACAGCCTTCAGCATCAACTGCCTCCATAAAATCAAAGGGAAAAGACACTGATGTTGCTAGGAAATGCTTTGAGCCTTCGGAAGTGAAAAAGTGGGCCATTGATGATTTGAATAAAACAATTCAGTGGCTGGAAAGTCAAGAAGAAAAGCCTGATCCAGGTGAGTTGACAAAAATAGCTGCAGAGGGGATTCTAACTTGTTTGCAAGATGCAATATGTTCTCTAGAGGAAAAACAGGACATCCGGAAAGGAACTGAGGACTGGATGTTCTTACCTCGTGTTGTTGAGGAGCTTGCAAAGTTTGATGTAGTAGGAAACAAGGGCTCATTGTCAAAGGAAGATCTTCGAAGACAGGCTTTGGATTGTAAACGTATTTATGAGGAGGAACTAAATAGTTTAGATCATGAAAGGAAAAAGAATTCAAAGGTAAATAAAGAACAGAGGAGCAAAACTGGAAGAACAAATGCCATGTCTTCTGGTGCAGTTGAGTATGATAGTGATGAGACAATTGAGATGACTGAACAAGAAATAGATATTGCATATAAGGCTTTGTCCTCTAATATCTGCCACTTGTGA

Predicted protein sequences of Glyma13g43750

Limit To All Plant Sequences

>Glyma13g43750.1   sequence type=predicted peptide   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTKRSANNSGSKRSLPSWTNSRENESDNSAKKPTLDGQGEKSSDAETPNKSKVQNENGGNASSLESKSFNKLLEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSDCTLLVCAFPNTPKFRQVEADCGTIVSKDWIIECYTQRKLIEIDSYLLHAGKPWRKGNGSLEVNEDKKPSVPKKLLKHVEREQPSASTASIKSKGKDTDVARKCFEPSEVKKWAIDDLNKTIQWLESQEEKPDPGELTKIAAEGILTCLQDAICSLEEKQDIRKGTEDWMFLPRVVEELAKFDVVGNKGSLSKEDLRRQALDCKRIYEEELNSLDHERKKNSKVNKEQRSKTGRTNAMSSGAVEYDSDETIEMTEQEIDIAYKALSSNICHL*

>Glyma13g43750.2   sequence type=predicted peptide   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTKRSANNSGSKRSLPSWTNSRENESDNSAKKPTLDGQGEKSSDAETPNKSKVQNENGGNASSLESKSFNKLLEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSDCTLLVCAFPNTPKFRQVEADCGTIVSKDWIIECYTQRKLIEIDSYLLHAGKPWRKGNGSLEVNEDKKPSVPKKLLKHVEREQPSASTASIKSKGKDTDVARKCFEPSEVKKWAIDDLNKTIQWLESQEEKVMIFHSCIKDCFCSFWRLQFSYLHSELA*

>Glyma13g43750.3   sequence type=predicted peptide   gene model=Glyma13g43750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTKRSANNSGSKRSLPSWTNSRENESDNSAKKPTLDGQGEKSSDAETPNKSKVQNENGGNASSLESKSFNKLLEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSDCTLLVCAFPNTPKFRQVEADCGTIVSKDWIIECYTQRKLIEIDSYLLHAGKPWRKGNGSLEVNEDKKPSVPKKLLKHVEREQPSASTASIKSKGKDTDVARKCFEPSEVKKWAIDDLNKTIQWLESQEEKPDPGELTKIAAEGILTCLQDAICSLEEKQDIRKGTEDWMFLPRVVEELAKFDVVGNKGSLSKEDLRRQALDCKRIYEEELNSLDHERKKNSKVNKEQRSKTGRTNAMSSGAVEYDSDETIEMTEQEIDIAYKALSSNICHL*

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