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Report for Sequence Feature Glyma13g43610

Feature Type:gene_model
Chromosome:Gm13
Start:43227467
stop:43229649
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g43610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52330AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:19488962-19489763 FORWARD LENGTH=214 SoyBaseE_val: 2.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1M5L5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M5L5_SOYBN SoyBaseE_val: 4.00E-101ISS
UniRef100_Q9C825UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9C825_ARATH SoyBaseE_val: 8.00E-50ISS

Expression Patterns of Glyma13g43610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43610 not represented in the dataset
Glyma13g43610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g43610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g359200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g43610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g43610
>Glyma13g43610.2   sequence type=CDS   gene model=Glyma13g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGATTCTCAAAAGCTTCCTTCTACACTCTTCTTCTCCGCAAACCTCATAACCATCACCATCAAAACTACGTCGTTTTATCGCGGCGTCGCGTAGTGACCTTGGCAGTGGGTGTGTTGATCTTGCTGAGTGCTCTCTACATTTTCTGGCCATCGGGTCCTGATCTGAAGATCGTGGGGCTGAAACTGAGGCGCATAAAGGTGCACCCTGTGCCGCCAATCACCATAGACATCTCCATGCTTCTCACGCTGAGGGTGCACAACGTTGACGTCTACTTCATGGACTTCGGAGCGGTTAACGTCGCCGTCGCCTACAGGGGGAAGATGCTGGGCCACGTGACGTCCAGGCGCATGCACGTGAGGGCCAGGGGGTCTTCCTACGTGGATGCTGACGTGGAATTTGCTGGCATCAGCGTGCTACCGGAGCTTGTGTTGCTGCTGGAGGACGTGGCCAGAGGTATCGTACCCTTTGATACCATTAGCCATGCTAAGGGCCAATTGGGCCTTCTCTTCTTTCACTTCCCCATCAAGGCAAAACTATCGTGTGAGGTTGTGGTCAGTATAATAAACCAGACCATTGTTCGTCAACATTGTCTCCACGAGTGA
Predicted protein sequences of Glyma13g43610
>Glyma13g43610.2   sequence type=predicted peptide   gene model=Glyma13g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFSKASFYTLLLRKPHNHHHQNYVVLSRRRVVTLAVGVLILLSALYIFWPSGPDLKIVGLKLRRIKVHPVPPITIDISMLLTLRVHNVDVYFMDFGAVNVAVAYRGKMLGHVTSRRMHVRARGSSYVDADVEFAGISVLPELVLLLEDVARGIVPFDTISHAKGQLGLLFFHFPIKAKLSCEVVVSIINQTIVRQHCLHE*






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