Glyma13g43600 - SoyBase

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Report for Sequence Feature Glyma13g43600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43223341
stop:	43226084
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45130	AT	Annotation by Michelle Graham. TAIR10: RAB homolog 1 \| chr5:18244495-18246060 FORWARD LENGTH=200	SoyBase	E_val: 2.00E-47	ISS
GO:0007034	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuolar transport	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF254	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_A9TLP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rab5/RabF-family small GTPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TLP5_PHYPA	SoyBase	E_val: 3.00E-48	ISS
UniRef100_I1M5L4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5L4_SOYBN	SoyBase	E_val: 8.00E-77	ISS

Expression Patterns of Glyma13g43600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43600 not represented in the dataset	Glyma13g43600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43600

Paralog	Evidence	Comments
Glyma15g01780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g359100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g43600

Limit To All Plant Sequences

>Glyma13g43600.2   sequence type=transcript   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGAGAATGCCTTTTAATGGATAATAACAACAGCACCAAAATTGAATATCAAAGCGGTGCGGACATTGTGAGTTATGTTGTATTCAACTAACAAACAGTCAACGCTAAACAAAAACTACCAGTCAACTACCCAAGTGCCCTGTTCTAAGCCAAGTTTCCTCTGAGAAATTTAGCTAGTAGCTTCTTTTGTCATAAGCTTCTCTTTCTTTTTCTGCAACTTCTACAATTTGTTTCTTTTTCTTCAACCTAGCGGTATGGCAAGGCCGGGGAATAAGATCATTCAAGCCAAGCTGGTACTTCTTGGAGACATGGGAACTGGAAAGACCAGTATAGCACTGAGATTTGTAAAAGGCCATTTCTTTCCTAACCAGGAACCAACCATAGGAGCTGCTTTTTTCACTCAAATATTGTCATTATCTGAAGCAACTGTGAAGTTCGATGTATGGGACACAGCCGGACAGGAACGTTATCATAGTTTGGCTCCTATGTACTACCGTGGTGCAGCAGCAGCAATTGTTGTCTATGACATCTCAAGCGTTGATACATTTGTTCGAGCCAAAAAAATGGGTTCAGGAATTGCAAACACATGGAAATCATAAGTCAGTGATGGCATTAGTAGTAAACAAATCTGATTTGGAG

>Glyma13g43600.3   sequence type=transcript   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGAGAATGCCTTTTAATGGATAATAACAACAGCACCAAAATTGAATATCAAAGCGGTGCGGACATTGTGAGTTATGTTGTATTCAACTAACAAACAGTCAACGCTAAACAAAAACTACCAGTCAACTACCCAAGTGCCCTGTTCTAAGCCAAGTTTCCTCTGAGAAATTTAGCTAGTAGCTTCTTTTGTCATAAGCTTCTCTTTCTTTTTCTGCAACTTCTACAATTTGTTTCTTTTTCTTCAACCTAGCGGTATGGCAAGGCCGGGGAATAAGATCATTCAAGCCAAGCTGGTGGGTACTTCTTGGAGACATGGGAACTGGAAAGACCAGTATAGCACTGAGATTTGTAAAAGGCCATTTCTTTCCTAACCAGGAACCAACCATAGGAGCTGCTTTTTTCACTCAAATATTGTCATTATCTGAAGCAACTGTGAAGTTCGATGTATGGGACACAGCCGGACAGGAACGTTATCATAGTTTGGCTCCTATGTACTACCGTGGTGCAGCAGCAGCAATTGTTGTCTATGACATCTCAAGCGTTGATACATTTGTTCGAGCCAAAAAAATGGGTTCAGGAATTGCAAACACATGGAAATCATAAGTCAGTGATGGCATTAGTAGTAAACAAATCTGATTTGGAG

Coding sequences of Glyma13g43600

Limit To All Plant Sequences

>Glyma13g43600.1   sequence type=CDS   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGGCCGGGGAATAAGATCATTCAAGCCAAGCTGGTACTTCTTGGAGACATGGGAACTGGAAAGACCAGTATAGCACTGAGATTTGTAAAAGGCCATTTCTTTCCTAACCAGGAACCAACCATAGGAGCTGCTTTTTTCACTCAAATATTGTCATTATCTGAAGCAACTGTGAAGTTCGATGTATGGGACACAGCCGGACAGGAACGTTATCATAGTTTGGCTCCTATGTACTACCGTGGTGCAGCAGCAGCAATTGTTGTCTATGACATCTCAAGCGTTGATACATTTGTTCGAGCCAAAAAAATGGGTTCAGGAATTGCAAACACATGGTAA

>Glyma13g43600.2   sequence type=CDS   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGGCCGGGGAATAAGATCATTCAAGCCAAGCTGGTACTTCTTGGAGACATGGGAACTGGAAAGACCAGTATAGCACTGAGATTTGTAAAAGGCCATTTCTTTCCTAACCAGGAACCAACCATAGGAGCTGCTTTTTTCACTCAAATATTGTCATTATCTGAAGCAACTGTGAAGTTCGATGTATGGGACACAGCCGGACAGGAACGTTATCATAGTTTGGCTCCTATGTACTACCGTGGTGCAGCAGCAGCAATTGTTGTCTATGACATCTCAAGCGTTGATACATTTGTTCGAGCCAAAAAAATGGGTTCAGGAATTGCAAACACATGGAAATCATAA

>Glyma13g43600.3   sequence type=CDS   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTGGAAAGACCAGTATAGCACTGAGATTTGTAAAAGGCCATTTCTTTCCTAACCAGGAACCAACCATAGGAGCTGCTTTTTTCACTCAAATATTGTCATTATCTGAAGCAACTGTGAAGTTCGATGTATGGGACACAGCCGGACAGGAACGTTATCATAGTTTGGCTCCTATGTACTACCGTGGTGCAGCAGCAGCAATTGTTGTCTATGACATCTCAAGCGTTGATACATTTGTTCGAGCCAAAAAAATGGGTTCAGGAATTGCAAACACATGGAAATCATAA

Predicted protein sequences of Glyma13g43600

Limit To All Plant Sequences

>Glyma13g43600.1   sequence type=predicted peptide   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARPGNKIIQAKLVLLGDMGTGKTSIALRFVKGHFFPNQEPTIGAAFFTQILSLSEATVKFDVWDTAGQERYHSLAPMYYRGAAAAIVVYDISSVDTFVRAKKMGSGIANTW*

>Glyma13g43600.2   sequence type=predicted peptide   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARPGNKIIQAKLVLLGDMGTGKTSIALRFVKGHFFPNQEPTIGAAFFTQILSLSEATVKFDVWDTAGQERYHSLAPMYYRGAAAAIVVYDISSVDTFVRAKKMGSGIANTWKS*

>Glyma13g43600.3   sequence type=predicted peptide   gene model=Glyma13g43600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTGKTSIALRFVKGHFFPNQEPTIGAAFFTQILSLSEATVKFDVWDTAGQERYHSLAPMYYRGAAAAIVVYDISSVDTFVRAKKMGSGIANTWKS*

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