SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79910 | AT | Annotation by Michelle Graham. TAIR10: Regulator of Vps4 activity in the MVB pathway protein | chr1:30055050-30057011 FORWARD LENGTH=381 | SoyBase | E_val: 1.00E-63 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2027 | KOG | Spindle pole body protein | JGI | ISS | |
| PTHR12161 | Panther | UNCHARACTERIZED DUF292 | JGI | ISS | |
| PTHR12161:SF4 | Panther | gb def: agcp6260 [anopheles gambiae str. pest] | JGI | ISS | |
| PF03398 | PFAM | Regulator of Vps4 activity in the MVB pathway | JGI | ISS | |
| UniRef100_G7II37 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: IST1-like protein n=1 Tax=Medicago truncatula RepID=G7II37_MEDTR | SoyBase | E_val: 3.00E-96 | ISS |
| UniRef100_UPI000233B20F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B20F related cluster n=1 Tax=unknown RepID=UPI000233B20F | SoyBase | E_val: 0 | ISS |
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Glyma13g43550 not represented in the dataset |
Glyma13g43550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g358600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g43550.2 sequence type=CDS gene model=Glyma13g43550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCTAGAGACGATATGCAAGAAAAGGAGCGCGGTGCAGAAATTTCTGAAGAAAGACATTGCCGACCTTCTTAGGAGTGCCCTTGATTACAATGCATATGGAAGGGCTGAAGGAGTTCTGGTCGAGCAAAATCTGACGTTTTGCTATGAAATTATTGGAAAATTTACTACTTGCATATTGGGTCACGTTGGAGACCTTTATAAGCAGAGGGATTGCCCCGCTGAATGCAAAGAAGCTATACAGTCATTGATATATGCTGCAGCAAGATTTTCTGATCTGCCGGAACTACGCGAGCTCAGAAGCTTGTTCACCGGGAAATTTGGGAATTCTCTTGAACTTTACATAAGTAAAGAGTTTGTTGAAAAGTTGAGGCAGTATCCTCCTTCGAAAGAAATGAAGATCCAGCTGTTGCATGATGTAGCGCAAGAGTTCTCTATAGAATGGAATAGCAAGGCTTTGGAGCAGAGACTTCACTCACCGCCTCAGTTACATTTAGAGAAGGCTAAACCTGATCTACTAAATGATCATGAGGATCACAAGAACAATGATGTCTCCCTATTTGAAGGAAAGAAGGATACCAGTGATGCCTATTGGAGGTCGCCACGAAGCAGCACTGAAGATGACAATTCATCGCTGGACGGCCATAATAAGGCTTGTTCAAGTTCATTAGGAAGCGTATCAGAGGATGAAACAGAAATTAAGAGGCCATTTTCCTACAACCTTGTTCCACCTCCTTATGTGAAACAAAAATTGAAGAAAGGTGAAAGTAATATGAACAAACCAACAAAATCAGAAGAAGCTCTCAAGCTACCACACGAGGATAACAATACTTTTTCAGATTCTAAAACGTGTGGCACTGCAAAGCTAGAAGACTCAAGTGGAAAGGAGTCAGAGAAAGCAAAGAAACAACCCCAACAGACTAAACCTGCAGAAGAAGAAGAAAAAGAAAGGACAGTGGATGGGCTCTTAATGCATTACACTAGGAAACAATCTCCTCATCCTTGTTTTCAACATGACAAGGGACCAGAAATGGTGAGGAGGACAGCGAGACATGTGCATCCTAGTCTGCCAGATTATGATGATTTGTTGGCTCGTCTTGCAGCTCTCAAGAAGACAACCCAACCAGCCTAG
>Glyma13g43550.2 sequence type=predicted peptide gene model=Glyma13g43550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLETICKKRSAVQKFLKKDIADLLRSALDYNAYGRAEGVLVEQNLTFCYEIIGKFTTCILGHVGDLYKQRDCPAECKEAIQSLIYAAARFSDLPELRELRSLFTGKFGNSLELYISKEFVEKLRQYPPSKEMKIQLLHDVAQEFSIEWNSKALEQRLHSPPQLHLEKAKPDLLNDHEDHKNNDVSLFEGKKDTSDAYWRSPRSSTEDDNSSLDGHNKACSSSLGSVSEDETEIKRPFSYNLVPPPYVKQKLKKGESNMNKPTKSEEALKLPHEDNNTFSDSKTCGTAKLEDSSGKESEKAKKQPQQTKPAEEEEKERTVDGLLMHYTRKQSPHPCFQHDKGPEMVRRTARHVHPSLPDYDDLLARLAALKKTTQPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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