Glyma13g43480 - SoyBase

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Report for Sequence Feature Glyma13g43480

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43161139
stop:	43162975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23180	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 10 \| chr4:12138171-12140780 FORWARD LENGTH=669	SoyBase	E_val: 2.00E-33	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF430	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9SSC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSC0_RICCO	SoyBase	E_val: 7.00E-31	ISS
UniRef100_I1M5K6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5K6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g43480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g358100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g43480

Limit To All Plant Sequences

>Glyma13g43480.1   sequence type=CDS   gene model=Glyma13g43480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTGTACAATGACAAGAGTGATGTGCAAATTTCAGGAGCAGGACAGGGGATAAATTTGGCAAATTTTGCCAAGAGAAAGGCTAGCTTCCATGGAACGCTAAGTGATCAGCAAGAAGTGGCAATAAAGCGACTTTCTAAAAGTTTGGAACAGGGGCTAATGGAGTTTACGAATGAAGCCAAACTCATGGCCAAACTCCAGCACACGAACTTGATAAAGCTTCTAGGGTTCTGCATCCAGAGAGATGAAAGAATATTGATCTATGAGTACATGCCTAACAAGAGCTTAGACTTCTACCTATTTGTAAAGATGTTAGCATTGATACATCAGGACCTAAAGGCAAGCAATATATTGCTTGATCACGAGATGAATATAAAATATCTGACTTTGGCATGGCTTCGAATATTTGGAGTAAGATTTATAAACGATAGTGAATTTTCAAATTTTAAAACTTTTGGTCTTTGGTATATGTTTATGAAAACATCTATCTTTCCGGTGGATATGTGGGGTCCAGAGTATGAAGCTGGAAAAGATGAGGAGGAGATTGGTTCCCAGTGTAATGCATTAAGAGCCCAATCATTGTCCTTTCTTCTTCTTCTGCAAGTTTGGTTTGTTGTTCCACAAGTTTTAGAATACGAAATACTGTTTTTTTTATCAGCCAAAATATATATATGTATATTAAATGAGTACCAGAGCCAATTGGATGATCCAGCCCAGAATTGCAACCTCATAAAAGAAACTATTACAAATATTTACCCTGCCCTCCTAATGTTAACTACAACGAAATCCTCCATAACAAAAACATTGCCTCATCCATCATTCAGTTTGCGTTGA

Predicted protein sequences of Glyma13g43480

Limit To All Plant Sequences

>Glyma13g43480.1   sequence type=predicted peptide   gene model=Glyma13g43480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVYNDKSDVQISGAGQGINLANFAKRKASFHGTLSDQQEVAIKRLSKSLEQGLMEFTNEAKLMAKLQHTNLIKLLGFCIQRDERILIYEYMPNKSLDFYLFVKMLALIHQDLKASNILLDHEMNIKYLTLAWLRIFGVRFINDSEFSNFKTFGLWYMFMKTSIFPVDMWGPEYEAGKDEEEIGSQCNALRAQSLSFLLLLQVWFVVPQVLEYEILFFLSAKIYICILNEYQSQLDDPAQNCNLIKETITNIYPALLMLTTTKSSITKTLPHPSFSLR*

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