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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54320 | AT | Annotation by Michelle Graham. TAIR10: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr1:20275732-20277793 REVERSE LENGTH=349 | SoyBase | E_val: 2.00E-121 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2952 | KOG | Cell cycle control protein | JGI | ISS | |
| PTHR10926 | Panther | CDC50-RELATED | JGI | ISS | |
| PTHR10926:SF0 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03381 | PFAM | LEM3 (ligand-effect modulator 3) family / CDC50 family | JGI | ISS | |
| UniRef100_G7IUN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division control protein n=1 Tax=Medicago truncatula RepID=G7IUN2_MEDTR | SoyBase | E_val: 3.00E-164 | ISS |
| UniRef100_I1MCS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MCS8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g43281 not represented in the dataset |
Glyma13g43281 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g02060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g356300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g43281.1 sequence type=CDS gene model=Glyma13g43281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATATGCCGGATGACAAAGACGCTCCTCCCACTTCAAAGAAAACTTCCACGAAACCCATATATTCAAAATTCTCACAGCAAGAACTTCCTGCATGGAAACCAATTCTAACACCTGGATGGGTCATTTCTGTCATTGGAGTCATCTTCATCCCTATTGGTCTTGCTTCATTGTTTTCATCAGATTGCCTTCCTCCCTCACATGCTCAAAATGCAGTGGCTTATATTCAAAGCGATACCACCAACAAGACCTGCATCACCAAATGGACTGTCGAGCATAAAATGGAAGCTCCTATTTATATCTATTATCAACTAGATAATTACTACCAGAACCAGATGCTAATTTTTGTTAGCAGAGAAGATCGAATCCGCTACCTTTCTCTCCTAACCATCCAACCCACCTTATATCTCCTCAATAGAAGGGAGTATTCAAAAGAGTGTGTCAGAAAGTGCATTGTTAGCATACTGTTCTTCTCCATTATTGCAGTGATAGTGTTCAAAACTTCAAATTGTGTTGACATGATTTTGGTTAATTCTTGCAGATATGGGGAAACAACGAATTGTTTTCCCGAAGACAAGACAAAAGATAACCAGCCTATTGTTCCCTGTGGTCTCATTGCATGGAGTCTGTTCAACGACACATACAAATTTTCAACCAACAACAAGGACTTGACGGTCAACAAAAAGAACATTGCATGGGGGAGTGACCAAAGGTCCAGATTTGGCTCTGATGTTTATCCTAAAAATTTTCAGCGCGGAGATTTGATTGGGGGTGCAAAACTCAATGAGAGTATACCCTGGAGTCAACAAGAGGATCTGATAGTTTGGATGCGAACGGCAGCACTACCTACATTCAGAAAACTATATGGGAAGATAGAGGTTGACCTTGAAGTGAATGATGAGATAGAAATAGCAATAGAAAACAATTATAACACGTATGAGTTTGGAGGGAAAAAGAAGCTGGTTCTCTCAACAACAACTGTCATGGGAGGAAAAAATCCTTTCTTGGGGACAGCATATCTTTTCGTTGGTGGCCTATCCTTACTCTGTGCCATAGGATTCATACTTCTCTATGTCATCAAGCCAAGACCTCTTGGGGACCCGTCCTACCTGCCTTGGAACAGAAATCCAGGGAGTATCAAATGA
>Glyma13g43281.1 sequence type=predicted peptide gene model=Glyma13g43281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDMPDDKDAPPTSKKTSTKPIYSKFSQQELPAWKPILTPGWVISVIGVIFIPIGLASLFSSDCLPPSHAQNAVAYIQSDTTNKTCITKWTVEHKMEAPIYIYYQLDNYYQNQMLIFVSREDRIRYLSLLTIQPTLYLLNRREYSKECVRKCIVSILFFSIIAVIVFKTSNCVDMILVNSCRYGETTNCFPEDKTKDNQPIVPCGLIAWSLFNDTYKFSTNNKDLTVNKKNIAWGSDQRSRFGSDVYPKNFQRGDLIGGAKLNESIPWSQQEDLIVWMRTAALPTFRKLYGKIEVDLEVNDEIEIAIENNYNTYEFGGKKKLVLSTTTVMGGKNPFLGTAYLFVGGLSLLCAIGFILLYVIKPRPLGDPSYLPWNRNPGSIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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