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Report for Sequence Feature Glyma13g43260

Feature Type:gene_model
Chromosome:Gm13
Start:43022005
stop:43024039
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16250AT Annotation by Michelle Graham. TAIR10: NDH-dependent cyclic electron flow 1 | chr3:5507091-5508320 REVERSE LENGTH=204 SoyBaseE_val: 1.00E-72ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0010598GO-cc Annotation by Michelle Graham. GO Cellular Compartment: NAD(P)H dehydrogenase complex (plastoquinone) SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
KOG3309 KOG Ferredoxin JGI ISS
PTHR23426Panther FERREDOXIN/ADRENODOXIN JGI ISS
PTHR23426:SF2Panther FERREDOXIN JGI ISS
PF00111PFAM 2Fe-2S iron-sulfur cluster binding domain JGI ISS
UniRef100_C6T195UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T195_SOYBN SoyBaseE_val: 9.00E-141ISS
UniRef100_G7IUN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Electron carrier/ electron transporter/ iron ion binding protein n=1 Tax=Medicago truncatula RepID=G7IUN0_MEDTR SoyBaseE_val: 2.00E-90ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43260 not represented in the dataset

Glyma13g43260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g02080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g356100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g43260.1   sequence type=CDS   gene model=Glyma13g43260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACTCCTCCAACTCCAACTCACTTCTCATGCATTACGCTCTGTCTCTTCCCATAACTTCAGACCCCTCTATTCATCTAAGCGTGTCAGCTATGTAAGAACCAAAATTAGAGCTGTTGGCACAGTCCCTGATGAGAAGGACTCTGATTCAGACATCACCACTGACCCCGATGAGCCACCTTATGTCGGCCTCGTATTTGTTAGTTCTGTATTGCTACCAGATGGAACACCAGATATGCACTTTCGTTCTGCTTGTGGAGGCCAGAGGCTTAGGAAGATAATGCTCGATTCCAATGTTGACCTCTATGGACCCTATGCCAGACCTTTGTTAAATTGTGGAGGAGGTGGAACTTGTGGCACATGTATGGTGGAGGTTCTTGAAGGCAAGGAGCTTCTAAACCCTCGCACTGATAAAGAGAAAAAAATACTAAAGAAGAAACCAAAGAATTGGAGATTAGCATGTCAAACAACTGTTGGTAAACCAGATTCCAGAGGAGCGGTTGTGATTCAACAACTACCAGAGTGGAAAGGACACGAATGGAAATATGCAAAGCCTGGAGAGTCGGACTGGGAGTCGGAGTAA

>Glyma13g43260.1   sequence type=predicted peptide   gene model=Glyma13g43260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLQLQLTSHALRSVSSHNFRPLYSSKRVSYVRTKIRAVGTVPDEKDSDSDITTDPDEPPYVGLVFVSSVLLPDGTPDMHFRSACGGQRLRKIMLDSNVDLYGPYARPLLNCGGGGTCGTCMVEVLEGKELLNPRTDKEKKILKKKPKNWRLACQTTVGKPDSRGAVVIQQLPEWKGHEWKYAKPGESDWESE*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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