SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16230 | AT | Annotation by Michelle Graham. TAIR10: Predicted eukaryotic LigT | chr3:5500991-5503303 FORWARD LENGTH=409 | SoyBase | E_val: 1.00E-140 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0016070 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA metabolic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG2814 | KOG | Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) | JGI | ISS | |
| PTHR13360 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13360:SF4 | Panther | RNA BINDING / CATALYTIC | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| UniRef100_G7IUM7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Activating signal cointegrator 1 complex subunit n=1 Tax=Medicago truncatula RepID=G7IUM7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AD35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AD35 related cluster n=1 Tax=unknown RepID=UPI000233AD35 | SoyBase | E_val: 0 | ISS |
|
Glyma13g43235 not represented in the dataset |
Glyma13g43235 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g02103 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g43235.1 sequence type=CDS gene model=Glyma13g43235 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGGTAGAAAGAAGAAAATATGTCTTGCAGACCATAGCATGGAACAGCAGAAAATGAATTCTATCTGGAGACCAATTGCCACCAATGCCAGTTCTTATGAAGAAAGCTTGATGAAGGATGCACTTGTTAAGTCAGTAGATGGAGGCAAAGTTCAAGAAACTGGCTGTAGCACATCTAGCAATATTTCAAATGAACATCTCACGAAGGTAGTTGCTGACTCAGCTACTAGTTCAAGCCAGTTGCAGGATAATGCTGAAAACAGAGTGCTAGAAGGAGATTCATCTGTCTCCACCGAAAAGCATTCAATTTCTGTTGGTGCTTCCCTATTTCGTTTTATTAAAGGAAAAGGGGGATCCACACAGAAAAAGATAGAAGAGGATATGGGGGTTAAAATCATAATACCTACTTCAAAAGAAGAGGATTTTTTAGTAACCACTGAAGGCATTTCAATCAACAGCGGGAATTCAGCTTCAGAGAAGATACAGGCTATAATTGATGAGACGGTTAATAGTCGAAGTCTTGATTATTCACACTTCATATCCCTTCCATTGGCCATTCATCCTGAGTTAGTTGATAAACTCATCAATTTTCAACATTCAATATTGGAAATTGGTTCTTGCATGGATGAGAATACTGATACTGAGACTGATTCCAATGAGGATGAGAGTACTACTACTGACACCAAAAAAGTGGATCAACTATCAAAGGAAAATTCTGGTGTTGCAGTTGAGCTTAAAGTTAATGACAACAGTAAATCGGTTAAAGTTAATGTTACTAACATACCCCTTGTCAGTTATGCACCTAAAGCATCCAAGTCTTCCGCTCCGTCTGACCTGGGTATTGACAAATCCATATTCATCAAGCCTAAAACATTTCACCTTACAGTACTCATGCTTAAGCTATGGAACAAAGAGCGAATTAAGACAGCCTCTGAGGTCTTGCAGAGTATCTCCTTGAAAGTTATGGAAGCCTTGGATAATCAGCCTCTCTCTATAAGATTAAAGGGACTGGTTGCTGCTTATCTGTTTACAAGATATACAATGACATTGCTACTAGTACATTCACTAAATCTATGGAATGAAGAATGCATCAAAGGTTCTTTGGCAAAAGCCCGTGTTCTGTATGCTCCTGTGGAAGAGACTGGCGGTGAGGATCGTCTTTTACATGTCTGTCAAGTCATCATTGATGCATATGTTGAAGCTGGACTTGTATTAGAGAATGATGCTAAACAGAAATTGAAGCTACACGCCACTGTGATGAATGCAAGGCATAGGAAAAGGAACAAGAACAAGTGGACAAGAAAGGACTGGGGGCAGTATCTTATTCCTGAAGCTCATCTTTCGCAGAGATTTTCTTTCAACGAAAATGGATACTATCATTGTTGTGCTTCAATTCCTTTTCCTGAAAATAAGCAGGTAGAATGA
>Glyma13g43235.1 sequence type=predicted peptide gene model=Glyma13g43235 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGRKKKICLADHSMEQQKMNSIWRPIATNASSYEESLMKDALVKSVDGGKVQETGCSTSSNISNEHLTKVVADSATSSSQLQDNAENRVLEGDSSVSTEKHSISVGASLFRFIKGKGGSTQKKIEEDMGVKIIIPTSKEEDFLVTTEGISINSGNSASEKIQAIIDETVNSRSLDYSHFISLPLAIHPELVDKLINFQHSILEIGSCMDENTDTETDSNEDESTTTDTKKVDQLSKENSGVAVELKVNDNSKSVKVNVTNIPLVSYAPKASKSSAPSDLGIDKSIFIKPKTFHLTVLMLKLWNKERIKTASEVLQSISLKVMEALDNQPLSIRLKGLVAAYLFTRYTMTLLLVHSLNLWNEECIKGSLAKARVLYAPVEETGGEDRLLHVCQVIIDAYVEAGLVLENDAKQKLKLHATVMNARHRKRNKNKWTRKDWGQYLIPEAHLSQRFSFNENGYYHCCASIPFPENKQVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
