Glyma13g43200 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g43200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g43200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g43200

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42984044
stop:	42986156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35420	AT	Annotation by Michelle Graham. TAIR10: dihydroflavonol 4-reductase-like1 \| chr4:16834091-16835611 REVERSE LENGTH=326	SoyBase	E_val: 4.00E-169	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0080110	GO-bp	Annotation by Michelle Graham. GO Biological Process: sporopollenin biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_G7IUM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase n=1 Tax=Medicago truncatula RepID=G7IUM5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B3C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B3C9 related cluster n=1 Tax=unknown RepID=UPI000233B3C9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43200 not represented in the dataset	Glyma13g43200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43200

Paralog	Evidence	Comments
Glyma15g02140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g355600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g43200

Limit To All Plant Sequences

>Glyma13g43200.3   sequence type=transcript   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAAATTGAAGCTATTCAAAATATGTTAAACTGGAAGTTATTTACAGCACAGGATTCCATTTATATCAAATGGTAAACTAGTAGTTTCACCAGAACATCATCAGTTTTTAAGTGTAGTTGGACAAATTTAGATTAGGTAGATCATGCACCCTTGACCAGAGAGTTAGTTAATAGTAATTAGCTTGGTCATCTAATCTTTGTGAGGACTAAGGAGGCTTCATATAGTGGCAGGGAGAAATGCATCATCAGCTTGGCTTGTGATATGGAACAAAGAGGCAGAGGGAAGCAGAAGAAGTATGAATACTTATGGTGTCTAGAAGGGGCAACAGAGAGGCTCCAACTAGTCCAAGCCGATTTGATGGAAGAAAGCAGCTTCGACAACGCAATCATGGGATGCAAAGGAGTCTTCCATGTGGCCTCTCCCGTACTCAATACTATATCTGATCCCAAGTCAGAAATATTGGAACCGGCAGTTAAAGGCACGCTGAATGTTCTTCGCTCTTGTGGAAAGAACCCAGCCCTTTGTCGTGTGGTATTAACCTCATCATCTTCAACTCTTAGGCTAAGAGATGATTTTGATCCAAACACCCCACTAGATGAATCATCCTGGAGCTCCTTGGAAATTTGTGAGAAACTCCAGGCATGGTATGCGATGGCAAAGACACAGGCAGAAAGAGCAGCGTGGGAATACTGCATAGAGAATGGAATAAATTTGGTGACAGTTCTGCCATCATTCATCATTGGACCCAGCTTGCCACCAAATTTATGCTCTACTGCATCTGATGTGCTAGGCTTGCTCAAAGGAGAAACCAAGCGATTCCAACTACTTGGAAGGATGGGATATGTTCATATCGATGATGTTGCCCTTTGCCAAATCCTTGTTTATGAAAATGAAGGCTCCCATGGTAGATACCTTTGCAGCTCTACCGTAATGGATGAAGATGATTTGGCTGCATTGCTAGCAAATCGTTATCCTACCCTCCCCATCTCCAAAAGGTTCGAGAAACTAGATAGGCCAAATTACGAACTAAACACTGGAAAGCTGAGGAGTCTAGGATTCAATTTTAAGTCTGTTGAAGAAATGTTCGATGATTGCATTGCATCCCTTGTGAAGCAGGGCCATGTCACTCTTCAGCAAGGCCACGGTCCAATTTAATAAACTTACATAAGTTGCTAGTTGAGATTGTACTCTGAATCCAAATGATCAATAACATTGTTAGGTTGATGGTACTTGCTTGCCAAATTAATGACCCTATATTTCAAATGTAGAACTGTGATATTATATCGAGACTCGGAAGTAACTCATGGGGATTTTTCTTTCCCTCGTATAAGAA

>Glyma13g43200.4   sequence type=transcript   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAAATTGAAGCTATTCAAAATATGTTAAACTGGAAGTTATTTACAGCACAGGATTCCATTTATATCAAATGGTAAACTAGTAGTTTCACCAGAACATCATCAGTTTTTAAGTGTAGTTGGACAAATTTAGATTAGGTAGATCATGCACCCTTGACCAGAGAGTTAGTTAATAGTAATTAGCTTGGTCATCTAATCTTTGTGAGGACTAAGGAGGCTTCATATAGTGGCAGGGAGAAATGCATCATCAGCTTGGCTTGTGATATGGAACAAAGAGGCAGAGGTAGAGTGTGTGTCACCGGGGCTTCAGGCTTTCTCGCCTCTTGGCTCATTAAGCGACTTCTTTTGTCTGGCTACCATGTCATTGGAACTGTCAGAGATTTAGGGAAGCAGAAGAAGTATGAATACTTATGGTGTCTAGAAGGGGCAACAGAGAGGCTCCAACTAGTCCAAGCCGATTTGATGGAAGAAAGCAGCTTCGACAACGCAATCATGGGATGCAAAGGAGTCTTCCATGTGGCCTCTCCCGTACTCAATACTATATCTGATCCCAAGGTTCTTAATTAGTGTGTGACATGGCACATGTCAGAAATATTGGAACCGGCAGTTAAAGGCACGCTGAATGTTCTTCGCTCTTGTGGAAAGAACCCAGCCCTTTGTCGTGTGGTATTAACCTCATCATCTTCAACTCTTAGGCTAAGAGATGATTTTGATCCAAACACCCCACTAGATGAATCATCCTGGAGCTCCTTGGAAATTTGTGAGAAACTCCAGGCATGGTATGCGATGGCAAAGACACAGGCAGAAAGAGCAGCGTGGGAATACTGCATAGAGAATGGAATAAATTTGGTGACAGTTCTGCCATCATTCATCATTGGACCCAGCTTGCCACCAAATTTATGCTCTACTGCATCTGATGTGCTAGGCTTGCTCAAAGGAGAAACCAAGCGATTCCAACTACTTGGAAGGATGGGATATGTTCATATCGATGATGTTGCCCTTTGCCAAATCCTTGTTTATGAAAATGAAGGCTCCCATGGTAGATACCTTTGCAGCTCTACCGTAATGGATGAAGATGATTTGGCTGCATTGCTAGCAAATCGTTATCCTACCCTCCCCATCTCCAAAAGGTTCGAGAAACTAGATAGGCCAAATTACGAACTAAACACTGGAAAGCTGAGGAGTCTAGGATTCAATTTTAAGTCTGTTGAAGAAATGTTCGATGATTGCATTGCATCCCTTGTGAAGCAGGGCCATGTCACTCTTCAGCAAGGCCACGGTCCAATTTAATAAACTTACATAAGTTGCTAGTTGAGATTGTACTCTGAATCCAAATGATCAATAACATTGTTAGGTTGATGGTACTTGCTTGCCAAATTAATGACCCTATATTTCAAATGTAGAACTGTGATATTATATCGAGACTCGGAAGTAACTCATGGGGATTTTTCTTTCCCTCGTATAAGAA

Coding sequences of Glyma13g43200

Limit To All Plant Sequences

>Glyma13g43200.2   sequence type=CDS   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAAGAGGCAGAGGTAGAGTGTGTGTCACCGGGGCTTCAGGCTTTCTCGCCTCTTGGCTCATTAAGCGACTTCTTTTGTCTGGCTACCATGTCATTGGAACTGTCAGAGATTTAGGGAAGCAGAAGAAGTATGAATACTTATGGTGTCTAGAAGGGGCAACAGAGAGGCTCCAACTAGTCCAAGCCGATTTGATGGAAGAAAGCAGCTTCGACAACGCAATCATGGGATGCAAAGGAGTCTTCCATGTGGCCTCTCCCGTACTCAATACTATATCTGATCCCAAGTCAGAAATATTGGAACCGGCAGTTAAAGGCACGCTGAATGTTCTTCGCTCTTGTGGAAAGAACCCAGCCCTTTGTCGTGTGGTATTAACCTCATCATCTTCAACTCTTAGGCTAAGAGATGATTTTGATCCAAACACCCCACTAGATGAATCATCCTGGAGCTCCTTGGAAATTTGTGAGAAACTCCAGGCATGGTATGCGATGGCAAAGACACAGGCAGAAAGAGCAGCGTGGGAATACTGCATAGAGAATGGAATAAATTTGGTGACAGTTCTGCCATCATTCATCATTGGACCCAGCTTGCCACCAAATTTATGCTCTACTGCATCTGATGTGCTAGGCTTGCTCAAAGGAGAAACCAAGCGATTCCAACTACTTGGAAGGATGGGATATGTTCATATCGATGATGTTGCCCTTTGCCAAATCCTTGTTTATGAAAATGAAGGCTCCCATGGTAGATACCTTTGCAGCTCTACCGTAATGGATGAAGATGATTTGGCTGCATTGCTAGCAAATCGTTATCCTACCCTCCCCATCTCCAAAAGGTTCGAGAAACTAGATAGGCCAAATTACGAACTAAACACTGGAAAGCTGAGGAGTCTAGGATTCAATTTTAAGTCTGTTGAAGAAATGTTCGATGATTGCATTGCATCCCTTGTGAAGCAGGGCCATGTCACTCTTCAGCAAGGCCACGGTCCAATTTAA

>Glyma13g43200.3   sequence type=CDS   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAAGAGGCAGAGGGAAGCAGAAGAAGTATGAATACTTATGGTGTCTAGAAGGGGCAACAGAGAGGCTCCAACTAGTCCAAGCCGATTTGATGGAAGAAAGCAGCTTCGACAACGCAATCATGGGATGCAAAGGAGTCTTCCATGTGGCCTCTCCCGTACTCAATACTATATCTGATCCCAAGTCAGAAATATTGGAACCGGCAGTTAAAGGCACGCTGAATGTTCTTCGCTCTTGTGGAAAGAACCCAGCCCTTTGTCGTGTGGTATTAACCTCATCATCTTCAACTCTTAGGCTAAGAGATGATTTTGATCCAAACACCCCACTAGATGAATCATCCTGGAGCTCCTTGGAAATTTGTGAGAAACTCCAGGCATGGTATGCGATGGCAAAGACACAGGCAGAAAGAGCAGCGTGGGAATACTGCATAGAGAATGGAATAAATTTGGTGACAGTTCTGCCATCATTCATCATTGGACCCAGCTTGCCACCAAATTTATGCTCTACTGCATCTGATGTGCTAGGCTTGCTCAAAGGAGAAACCAAGCGATTCCAACTACTTGGAAGGATGGGATATGTTCATATCGATGATGTTGCCCTTTGCCAAATCCTTGTTTATGAAAATGAAGGCTCCCATGGTAGATACCTTTGCAGCTCTACCGTAATGGATGAAGATGATTTGGCTGCATTGCTAGCAAATCGTTATCCTACCCTCCCCATCTCCAAAAGGTTCGAGAAACTAGATAGGCCAAATTACGAACTAAACACTGGAAAGCTGAGGAGTCTAGGATTCAATTTTAAGTCTGTTGAAGAAATGTTCGATGATTGCATTGCATCCCTTGTGAAGCAGGGCCATGTCACTCTTCAGCAAGGCCACGGTCCAATTTAA

>Glyma13g43200.4   sequence type=CDS   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAATATTGGAACCGGCAGTTAAAGGCACGCTGAATGTTCTTCGCTCTTGTGGAAAGAACCCAGCCCTTTGTCGTGTGGTATTAACCTCATCATCTTCAACTCTTAGGCTAAGAGATGATTTTGATCCAAACACCCCACTAGATGAATCATCCTGGAGCTCCTTGGAAATTTGTGAGAAACTCCAGGCATGGTATGCGATGGCAAAGACACAGGCAGAAAGAGCAGCGTGGGAATACTGCATAGAGAATGGAATAAATTTGGTGACAGTTCTGCCATCATTCATCATTGGACCCAGCTTGCCACCAAATTTATGCTCTACTGCATCTGATGTGCTAGGCTTGCTCAAAGGAGAAACCAAGCGATTCCAACTACTTGGAAGGATGGGATATGTTCATATCGATGATGTTGCCCTTTGCCAAATCCTTGTTTATGAAAATGAAGGCTCCCATGGTAGATACCTTTGCAGCTCTACCGTAATGGATGAAGATGATTTGGCTGCATTGCTAGCAAATCGTTATCCTACCCTCCCCATCTCCAAAAGGTTCGAGAAACTAGATAGGCCAAATTACGAACTAAACACTGGAAAGCTGAGGAGTCTAGGATTCAATTTTAAGTCTGTTGAAGAAATGTTCGATGATTGCATTGCATCCCTTGTGAAGCAGGGCCATGTCACTCTTCAGCAAGGCCACGGTCCAATTTAA

Predicted protein sequences of Glyma13g43200

Limit To All Plant Sequences

>Glyma13g43200.2   sequence type=predicted peptide   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQRGRGRVCVTGASGFLASWLIKRLLLSGYHVIGTVRDLGKQKKYEYLWCLEGATERLQLVQADLMEESSFDNAIMGCKGVFHVASPVLNTISDPKSEILEPAVKGTLNVLRSCGKNPALCRVVLTSSSSTLRLRDDFDPNTPLDESSWSSLEICEKLQAWYAMAKTQAERAAWEYCIENGINLVTVLPSFIIGPSLPPNLCSTASDVLGLLKGETKRFQLLGRMGYVHIDDVALCQILVYENEGSHGRYLCSSTVMDEDDLAALLANRYPTLPISKRFEKLDRPNYELNTGKLRSLGFNFKSVEEMFDDCIASLVKQGHVTLQQGHGPI*

>Glyma13g43200.3   sequence type=predicted peptide   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQRGRGKQKKYEYLWCLEGATERLQLVQADLMEESSFDNAIMGCKGVFHVASPVLNTISDPKSEILEPAVKGTLNVLRSCGKNPALCRVVLTSSSSTLRLRDDFDPNTPLDESSWSSLEICEKLQAWYAMAKTQAERAAWEYCIENGINLVTVLPSFIIGPSLPPNLCSTASDVLGLLKGETKRFQLLGRMGYVHIDDVALCQILVYENEGSHGRYLCSSTVMDEDDLAALLANRYPTLPISKRFEKLDRPNYELNTGKLRSLGFNFKSVEEMFDDCIASLVKQGHVTLQQGHGPI*

>Glyma13g43200.4   sequence type=predicted peptide   gene model=Glyma13g43200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEILEPAVKGTLNVLRSCGKNPALCRVVLTSSSSTLRLRDDFDPNTPLDESSWSSLEICEKLQAWYAMAKTQAERAAWEYCIENGINLVTVLPSFIIGPSLPPNLCSTASDVLGLLKGETKRFQLLGRMGYVHIDDVALCQILVYENEGSHGRYLCSSTVMDEDDLAALLANRYPTLPISKRFEKLDRPNYELNTGKLRSLGFNFKSVEEMFDDCIASLVKQGHVTLQQGHGPI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain