Glyma13g43101 - SoyBase

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Report for Sequence Feature Glyma13g43101

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42867835
stop:	42880711
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43101

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48120	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:19508210-19514774 REVERSE LENGTH=1134	SoyBase	E_val: 0	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG1967	KOG	DNA repair/transcription protein Mms19	JGI		ISS
PTHR12891	Panther	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	JGI		ISS
PF12460	PFAM	NER and RNAPII transcription protein n terminal	JGI		ISS
UniRef100_G7IHZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MMS19 nucleotide excision repair protein-like protein n=1 Tax=Medicago truncatula RepID=G7IHZ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AD39	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AD39 related cluster n=1 Tax=unknown RepID=UPI000233AD39	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43101

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g43101 not represented in the dataset	Glyma13g43101 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43101

Paralog	Evidence	Comments
Glyma15g02271	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43101 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g354600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43101

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g43101

Limit To All Plant Sequences

>Glyma13g43101.1   sequence type=CDS   gene model=Glyma13g43101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAACCACTCAATTGACTCGCCACATTGAGTCCTACGTCGACTCTTCTTCTCCCACTCATCAGGCTGCAAGTCTGAACGCAATTGCATCTCTCGTGAACACTGATGCCTTAACTCTAGAAGCACTGATCAGAGAGTTGGAGATGTATTTGACCACAACAGATAACGTTGTACGGGCAAGAGGAATTCTTCTTCTAGCAGAGGTGATGACTCATATTGAATCAAAACCTCTTAACAGTGCAACTATACATAGTTTGGTTGGATTCTTCAAGGACAGACTGGCAGATTGGAGAGCAGTGCGAGGTGCACTTGTGGGTTGCTTGGCACTGATAAGGAGAAAAAGTGTTGTGGGTATGGTAACTGATAGTGATGCCACAACCATTGCTCAGTCTTTTTTACAGTACATGCAAGTTCAATCTTTAGGACAGCATTATGACAGGAAGCTGTGCTTTGAACTGCTTGATTGCCTGCTAGAACGCTACTTTGATGCAGTTACTACACTGGGGGAGGACCTTATTTATGGAATTTGTGAAGCCATAGATGCAGAAAAGGATCCAGATTGTTTAAAGCTTGCTTTTCATATTGTTGAGTCTTTGGCACAATTAAATCCAGATTCATCTGGTCTACTTGCAAGCTTTGCTAAAGATGTTTTTGATATTTTAGAACCTTACTTTCCCATTCACTTTACACGTCCAAGTAGTGGAGATACTCATGTGCAAAGAGACCTGTCAACATCTCTGATGTCTGCATTCTCTTCTACACCTCTCTTTGAGCCGTTTGTCATTCCTCTGCTTCTTGAGAAACTTTCTTCTTCACTGCATTCAGCAAAGATTGATTCCTTAAAATATCTTAGAGTGTGCTCTTCCAAGTATGGGGCAGGGAGAATTGCAAAATATGCCGGGGCTATTTGGTCTTCATTAAAAGACACCCTATCTACTTATTTGGGGGAGCCGGATTTTTCTTTTACTATAGCACCTGTAGATGGTATTGGCTTCCCAGAGAATGAATTTGTACTAGAAGCTCTGTCCCTCCTTCAGCAGCTTATTGTGCAAAATAGTAGTTTGTTAGTTAGCTTGATAATTGATGATGAGGATGTCAACTCTATTTTCAGCACCATTGCCTCTTATGAGACTTATGATGCTATTCCTGTGCAAGAAAAGAAGAAACTACATGCTATTGGTCGTATTCTGAATATTACTGCCAAGACTACCATTTCTTCTTGTAATGCTGTGTTTGAAAGTCTTTTCTCCAGACTGATGGATAATTTGGGATTTTCTGTTAGGTTTCCAAACAGTGATATTCCCCCCTCTCAGAGAGTCAAGTTCGGATTCCTTTATGTCTGCATTGAACTACTTGCAGGGTGCAGGGAATTAATTGTTGGGTCTGATGAACCAGCTCTGCAATATGTTTTTGAGCATGAGACATGTTGCACTATGCTTCATCGTTTTTCAACCCCATTATTTAATGCCTTTGGTTCAGTCTTGGCAGTAAGTGCTGACAGATGTCCTCTTGATCCAGATACATACATTGGAGTGAAGGGTTTGCAGATACTTGCCATGTTTGGTTCAGATGTTTTTCCAATACAAAAATCAGTATTTGAGAATATTTTGAAGAAATTCATGTCAATTATCGTAGAGGATTTCAACAAAACAATATTATGGGAAGCAGCATTGAAAGCATTATATCAAGTCGGCTCATTTGTTCAGAAGTTTCATGAGTCTGAAAAAGCTATGAGCTACAGGAATTTAGTCGTAGAAAAAATTGTGGAAATTCTGTCTCTTGACGATATTACTCTGCCATTTTCACTTGAATTGGAAGCATTATCAAATATAGGCATGACTGGAATGAAAAATATGCTAACCATTCTTCAAGGGTTGGGAAGAGCAGTATTTTCCAATCTATCCAAGGTTCATGTCCATAGAAATTTAAGGTCTTCTGATATTGCTGTTCAGCTTTTGGAATGCTATTCTTGCCAGTTGCTCCCATGGATCCATGAAAATGGAGGTTCGGAGGACTTTGTGATGCAATTTGTGGTGGACATTTGGAGTCAAGCAGGAAATTGCATGGATTTCAGTACCCTGTTCGAGGAAAAGGGTCTTCTTGACGCAATAATGAAAGCAATGAAACTTTCTGTAGGGAGTTGTGCTGTGGAGAGCCAAAACCTTATAATTCAAAAAGCTTACTGTGTACTATCATCACATACTAACTTTCAGCAGCTTAAAGAAGTGGAAAGATTACCTCTAACTCCTGGAAATTACAACATTTCCCTTAGAGATGAAGGATTAATTTCATTATTTGCGTCAGTAGTTATTGCAGTTTTCCCTAAAACATACATTCCAAATAAAAGAGTACTTATGCATCTATTTATAATAACCCTCCTCAGAGGTGGTGTTGTTCCAGTTGCACAGGCCTTGGGTTCCATACTTAACAAATTAGTTTCAACATCCAACAGTGCAGAGAACTCTAGTGATCTTACCTTGGAAGAAGCTCTGGATGTTATATTCAATACAAAAATATCATTTTCTAGTACTGATAATGGAAGAAGTAATGGGAATGAAATGGTTCTTACTGATATATGCTTGGGCATCGCAAATGATAGAATGCTTCAAATCAATGCCATTTGTGGGCTCTCATGGATAGGAAAAGGTTTACTTTTAAGTGGTCATGAAAAGATTAAAGACATCATTATGATTTTTTTGGAGTGCTTAATATCAGGCACAAAAAGTGCCTCGCCTTTGATCAAAGATTCACTTGAAAATACTGAAGAGCATATTCAAGATCTTTTAGTGATGAAATGTGCTGCTGATGCTTTTCATGTTCTTATGAGTGATTCAGAAGTTTGTTTGAACAGAAAATTTCATGCCATGATACGACCTCTATATAAGCAGCGATTTTCCTCTTCTGTGATGCCTATCTTGCAGCAGATTATTACAAAATCTCACTCCTCATTGTCCAGATCTTTTTTGTATCGAGCTTTTGCACATATCCTGTCTGATACTCCAATGGTTGCTATACTGAGTGAAGCTAAAAAGCTTATACCAGTTCTACTGGATTGCTTGTCCATGTTGACAGAAGATATCCAAGATAAAGATATGTTATATGGTCTGCTGCTAGTCTTATCTGGGATATTGACTGAGAAAAATGGACAAGAAGCTGCCATTGAGAATGCACACATTATCATCAATTGTCTGATTAAGCTTGTGGATTACCCTCATAAGATGCTTGTTCGAGAGACAGCTATTCAATGTCTTGTTGCCTTGTCCGAGTTGCCCCACGCACGTATCTATCCTATGAGGACACAGGTTCTACGAGCAATATCAAAGTGTCTTGACGATTCAAAGAGAGCTGTTCGCCATGAAGCTGTCAAATGTCGGCAAACATGGGCATCAACGTAA

Predicted protein sequences of Glyma13g43101

Limit To All Plant Sequences

>Glyma13g43101.1   sequence type=predicted peptide   gene model=Glyma13g43101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETTQLTRHIESYVDSSSPTHQAASLNAIASLVNTDALTLEALIRELEMYLTTTDNVVRARGILLLAEVMTHIESKPLNSATIHSLVGFFKDRLADWRAVRGALVGCLALIRRKSVVGMVTDSDATTIAQSFLQYMQVQSLGQHYDRKLCFELLDCLLERYFDAVTTLGEDLIYGICEAIDAEKDPDCLKLAFHIVESLAQLNPDSSGLLASFAKDVFDILEPYFPIHFTRPSSGDTHVQRDLSTSLMSAFSSTPLFEPFVIPLLLEKLSSSLHSAKIDSLKYLRVCSSKYGAGRIAKYAGAIWSSLKDTLSTYLGEPDFSFTIAPVDGIGFPENEFVLEALSLLQQLIVQNSSLLVSLIIDDEDVNSIFSTIASYETYDAIPVQEKKKLHAIGRILNITAKTTISSCNAVFESLFSRLMDNLGFSVRFPNSDIPPSQRVKFGFLYVCIELLAGCRELIVGSDEPALQYVFEHETCCTMLHRFSTPLFNAFGSVLAVSADRCPLDPDTYIGVKGLQILAMFGSDVFPIQKSVFENILKKFMSIIVEDFNKTILWEAALKALYQVGSFVQKFHESEKAMSYRNLVVEKIVEILSLDDITLPFSLELEALSNIGMTGMKNMLTILQGLGRAVFSNLSKVHVHRNLRSSDIAVQLLECYSCQLLPWIHENGGSEDFVMQFVVDIWSQAGNCMDFSTLFEEKGLLDAIMKAMKLSVGSCAVESQNLIIQKAYCVLSSHTNFQQLKEVERLPLTPGNYNISLRDEGLISLFASVVIAVFPKTYIPNKRVLMHLFIITLLRGGVVPVAQALGSILNKLVSTSNSAENSSDLTLEEALDVIFNTKISFSSTDNGRSNGNEMVLTDICLGIANDRMLQINAICGLSWIGKGLLLSGHEKIKDIIMIFLECLISGTKSASPLIKDSLENTEEHIQDLLVMKCAADAFHVLMSDSEVCLNRKFHAMIRPLYKQRFSSSVMPILQQIITKSHSSLSRSFLYRAFAHILSDTPMVAILSEAKKLIPVLLDCLSMLTEDIQDKDMLYGLLLVLSGILTEKNGQEAAIENAHIIINCLIKLVDYPHKMLVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWAST*

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