Glyma13g43050 - SoyBase

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Report for Sequence Feature Glyma13g43050

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42821728
stop:	42825940
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16500	AT	Annotation by Michelle Graham. TAIR10: phytochrome-associated protein 1 \| chr3:5612801-5614208 REVERSE LENGTH=269	SoyBase	E_val: 5.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_B9RQE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive protein IAA6, putative n=1 Tax=Ricinus communis RepID=B9RQE0_RICCO	SoyBase	E_val: 2.00E-118	ISS
UniRef100_I1M5G0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5G0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43050

Paralog	Evidence	Comments
Glyma15g02350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g354100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g43050

Limit To All Plant Sequences

>Glyma13g43050.4   sequence type=transcript   gene model=Glyma13g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTATCTTTAGGGGAGGTCAGCACTCAGCACAACACAAGCACAAGCCACAGCATGCTTTACTTCCTGTGCTAAACAACCTTATTTTTATGAGACTTGAGGTTGCGTGCATTGTGCTCTAATTCCGTTCCTGTTTTGTGTTCTTGGGTTGGTTGGTTTGGCCAAGGGGAATCTCTCTGGTTTTTATCACCACTCTGTCTCTCTCTTTTTTTTTTTTTTTTCCTCTCTCCTTTAAAAGAGGAAAGACAGAGAGAAAGAGAAAGAGAGCAGGAGAACCCACTAAGCGTGCAAATAAAAGACTTAAAGCAAAGCTAAGATTACAATCCCATGCTATTATAGCTCCCTCCACCTTTGCTTTGCCTTGCTTTTCGGGTGTGTATTTCTCTTCCTTCCTTCCTTTCTCTCTTGGTGGGGTTTACGTTGAGCTGTGATAATACTTGCGCGTTCCTCCTTCTGCTACCAACGTTTTGCAGTGCCCAAAACCTTAAAAACCTTTTAAGTTTTCCATTCTGGCTGTTCGCTCGGACTCTCACACTTGTCGCAAAGAAGCCCTTGTTTCTCACAATTACAAGATGTGGTATTTTGCGGATTTAAGCTGCGACTAGACCTGTAACTCAGTGGGGGTTCTAGAGTTTGTTTCTGTTTCTTGCATATATATATATATATATATATATATATATATTTGGTGAGTGATATTTGAGCTAGGAGGAATCTTCCTTTTGAGTGTGGTGTGAACAAAAGATGAATGAAAGGTCAAGAGACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAGTCCTCAGAAGAAAGAAAACTCGAACTCAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGTGGTAAAATGAAGAACAACAACACAGAAAGAGAAGATCAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACATTAACAGTAATGCGTTCCAAAGCAAGGCCTCTCATCCATGGCCAAACTACCACCACCATGGCCAGGGTAACAACAAAAAAGCCTCTTCTTCATCATTTCTTCAGTTCCCATCATCAACCCAACCTGTGATGATGGGAAAAGATGCTTCTTGCCCTAAGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAGAACCTTTCAAGCAGCAGCAGTGCTTCTAAGCCACCACCACCTCCTGAGTCTCAGGCTGAGCAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAGCGGTTTGAGGTTTTTGTTCACCTGCTGAAACTCGAAGACTCATCTAATTTGAAGTTTTGGTTCTTTTGTCTGATGAAAAGATCATGGAATGAAGCTAGTTGCGTACATTACAACTAAGTAATGTGATGAATGTGTTTTTTTTTTAATGAAGATTTGAAATGTTTATGGGTTGTATAAATAGGGAAGGGAAACTTCACGGATGTGTGTACTTATGATTTACTGTTGAGTAACCGTTAACTTGTTTTGGTTTGTATTTTGAAGTCCCTTTTGTAGGTGCGGTTTTTCAGGGTCTTAATAATTTTCACTTCGTCATGGCAAAGAGTCAAATTTGGGACCTGTAAAAATATGGTTTTATTTGCTGGAATATTTTTCTCCCAAAATCTATTGATTTTAATTAAACTTCTTTTTAAC

Coding sequences of Glyma13g43050

Limit To All Plant Sequences

>Glyma13g43050.3   sequence type=CDS   gene model=Glyma13g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAAAGGTCAAGAGACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAGTCCTCAGAAGAAAGAAAACTCGAACTCAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGTGGTAAAATGAAGAACAACAACACAGAAAGAGAAGATCAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACATTAACAGTAATGCGTTCCAAAGCAAGGCCTCTCATCCATGGCCAAACTACCACCACCATGGCCAGGGTAACAACAAAAAAGCCTCTTCTTCATCATTTCTTCAGTTCCCATCATCAACCCAACCTGTGATGATGGGAAAAGATGCTTCTTGCCCTAAGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAGAACCTTTCAAGCAGCAGCAGTGCTTCTAAGCCACCACCACCTCCTGAGTCTCAGGCTGAGCAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGA

>Glyma13g43050.4   sequence type=CDS   gene model=Glyma13g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAAAGGTCAAGAGACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAGTCCTCAGAAGAAAGAAAACTCGAACTCAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGTGGTAAAATGAAGAACAACAACACAGAAAGAGAAGATCAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACATTAACAGTAATGCGTTCCAAAGCAAGGCCTCTCATCCATGGCCAAACTACCACCACCATGGCCAGGGTAACAACAAAAAAGCCTCTTCTTCATCATTTCTTCAGTTCCCATCATCAACCCAACCTGTGATGATGGGAAAAGATGCTTCTTGCCCTAAGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAGAACCTTTCAAGCAGCAGCAGTGCTTCTAAGCCACCACCACCTCCTGAGTCTCAGGCTGAGCAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGA

Predicted protein sequences of Glyma13g43050

Limit To All Plant Sequences

>Glyma13g43050.3   sequence type=predicted peptide   gene model=Glyma13g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNERSRDEASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPGEDWSLGGKMKNNNTEREDQSLLSLGCFSPNINSNAFQSKASHPWPNYHHHGQGNNKKASSSSFLQFPSSTQPVMMGKDASCPKVVVELQQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLSSSSSASKPPPPPESQAEQQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEFTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSAMK*

>Glyma13g43050.4   sequence type=predicted peptide   gene model=Glyma13g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNERSRDEASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPGEDWSLGGKMKNNNTEREDQSLLSLGCFSPNINSNAFQSKASHPWPNYHHHGQGNNKKASSSSFLQFPSSTQPVMMGKDASCPKVVVELQQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLSSSSSASKPPPPPESQAEQQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEFTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSAMK*

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