Glyma13g42880 - SoyBase

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Report for Sequence Feature Glyma13g42880

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42705720
stop:	42709962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51760	AT	Annotation by Michelle Graham. TAIR10: peptidase M20/M25/M40 family protein \| chr1:19199562-19201424 FORWARD LENGTH=440	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0010179	GO-mf	Annotation by Michelle Graham. GO Molecular Function: IAA-Ala conjugate hydrolase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR11014	Panther	PROTEASE M20-RELATED	JGI		ISS
PTHR11014:SF44	Panther		JGI		ISS
PF01546	PFAM	Peptidase family M20/M25/M40	JGI		ISS
PF07687	PFAM	Peptidase dimerisation domain	JGI		ISS
UniRef100_I1M5E5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5E5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GXX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin conjugate hydrolase n=1 Tax=Medicago truncatula RepID=Q0GXX6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42880

Paralog	Evidence	Comments
Glyma15g02560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g352400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g42880

Limit To All Plant Sequences

>Glyma13g42880.1   sequence type=CDS   gene model=Glyma13g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTTTCTTGAAATGGGTCAACTTGTTTGTCTTTTTTCATTTCCTTGCTGCAACACCCATCTTCTCAGATTCCTCCTCCAGCTCAAATGCAATCGCCACCACCAAGTTCCTTGATTTAGCCAAGGATCCTCGGGTTTTTGATTGGATGGTTGGTATCAGGAGGAAGATTCATGAGAATCCAGAACTGGGTTATGAGGAATTTGAGACCAGTAAGCTGATTAGAGCTGAATTGGATAAACTGGGCATCTCATATAAACACCCAGTTGCAGTCACGGGTGTTGTTGGCTTCATAGGGACTGGACTTCCTCCTTTTGTTGCATTAAGAGCTGACATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGCTCATGTTGCCATGCTTCTTGGTGCTGCAAAGATCCTCAAAGAGCATGAAAATGAGATACGAGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGTCTTGGAAAACATCTCTGCCATATTCGGATTGCATATTGCACCTACCTATCCTATAGGTGAAGTGGCCTCTAGGTCGGGTCCCATATTTGCAGGAAGCGGCTTCTTTGAAGCAACAATAAATGGCAGGGGAGGCCATGCTGCTATCCCTCAGCACTCTATAGACCCAATATTGGCAGCTTCCAATGTGATTGTTAGTTTACAGCATATTGTTTCTCGCGAGGCCGATCCTCTGGACTCCCAGGTCGTCACTGTAGGAAAATTTCAGGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTTGCAATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAACTGAGACAGAGGATTGAACAGGTTATCACTGGGCAAGCTGCAGTGCAGAGATGCAATGCAACGGTCAACTTTCTTGACGACGAGAAACCTTTCTTCCCTCCTACAGTAAACAATGGTGACTTGCATGAGTACTTTAAAAGTGTTGCTGGGAGTTTGCTTGGCGTCAATAATGTTAAGGACATGCAACCATTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCGGGATACTTCTTCCTCCTTGGAATGGAGAATGTCTCTATTGAACATCTTGAATCTCCACACTCTCCATATTTCAAAATCAATGAGGACGCACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTAGCAGCTATCTTCTCAAATTAAATCAGGACATACCAGTAGTGGAGGGGAAACATCACGATGAATTATAG

Predicted protein sequences of Glyma13g42880

Limit To All Plant Sequences

>Glyma13g42880.1   sequence type=predicted peptide   gene model=Glyma13g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFFLKWVNLFVFFHFLAATPIFSDSSSSSNAIATTKFLDLAKDPRVFDWMVGIRRKIHENPELGYEEFETSKLIRAELDKLGISYKHPVAVTGVVGFIGTGLPPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKEHENEIRGTVVLVFQPAEEGGGGAKKILDAGVLENISAIFGLHIAPTYPIGEVASRSGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREADPLDSQVVTVGKFQGGGAFNVIPDSVAIGGTFRAFSKESFMQLRQRIEQVITGQAAVQRCNATVNFLDDEKPFFPPTVNNGDLHEYFKSVAGSLLGVNNVKDMQPLMGSEDFAFYQEVFPGYFFLLGMENVSIEHLESPHSPYFKINEDALPYGAALHASLASSYLLKLNQDIPVVEGKHHDEL*

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