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Report for Sequence Feature Glyma13g42860

Feature Type:gene_model
Chromosome:Gm13
Start:42698261
stop:42699823
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g42860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73040AT Annotation by Michelle Graham. TAIR10: Mannose-binding lectin superfamily protein | chr1:27475159-27475777 REVERSE LENGTH=176 SoyBaseE_val: 4.00E-78ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23244Panther KELCH REPEAT DOMAIN JGI ISS
PTHR23244:SF8Panther JASMONATE INDUCIBLE PROTEIN-RELATED JGI ISS
PF01419PFAM Jacalin-like lectin domain JGI ISS
UniRef100_G7IHX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Agglutinin alpha chain n=1 Tax=Medicago truncatula RepID=G7IHX4_MEDTR SoyBaseE_val: 1.00E-93ISS
UniRef100_I1M5E3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M5E3_SOYBN SoyBaseE_val: 4.00E-128ISS

Expression Patterns of Glyma13g42860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g42860 not represented in the dataset
Glyma13g42860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42860
ParalogEvidenceComments
Glyma15g02590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g352300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g42860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g42860
>Glyma13g42860.1   sequence type=CDS   gene model=Glyma13g42860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAAAAGTAGGAAGAAGAATGTAATAGTGGGACCATGGGGAGGCAACGGTGGAAATAGCTGGGATGATGGAATCTTCACAGGGGTGAGAGAAATCAAACTTGTTTATGGCCATTGCATAGACTCAATTCAGGTGGTTTATGATAGGAATGGCAAGCCTTTCACAGCTGAAAAACATGGAGGAGTTGGAGGTAACAAAACAGCTGAGATTAAGCTGCAATTCCCAGATGAGTTCTTGGTCAGTGTGAGCGGCCACTACTGTCCAGTTGTTCGCGGAGGCACCCCCGTGATTCGGTCATTGACATTCAAGAGCAACCACAGAACCTTTGGACCATATGGAGTTGAAGAAGGGACTCTATTCACTTTTTCGATAGATGGAGGCTGTGTTGTGGGTTTTAAGGGGCGAGGTGATTGGTATTTGGATGCAATTGCTTTCACTTTGTGTAATACACGATCAAAGTCGCTGTTTCAGAAAGTGCAGAGGAGCTTGCTGTGGTTAACAACCACTGCTCCAAAATCTACATCCTCCAAGGATGGCTAG
Predicted protein sequences of Glyma13g42860
>Glyma13g42860.1   sequence type=predicted peptide   gene model=Glyma13g42860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKSRKKNVIVGPWGGNGGNSWDDGIFTGVREIKLVYGHCIDSIQVVYDRNGKPFTAEKHGGVGGNKTAEIKLQFPDEFLVSVSGHYCPVVRGGTPVIRSLTFKSNHRTFGPYGVEEGTLFTFSIDGGCVVGFKGRGDWYLDAIAFTLCNTRSKSLFQKVQRSLLWLTTTAPKSTSSKDG*






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