Glyma13g42800 - SoyBase

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Report for Sequence Feature Glyma13g42800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42667902
stop:	42676424
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17720	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A, regulatory subunit PR55 \| chr1:6093949-6098065 REVERSE LENGTH=501	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0000159	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1354	KOG	Serine/threonine protein phosphatase 2A, regulatory subunit	JGI		ISS
PTHR11871	Panther	PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B	JGI		ISS
UniRef100_I1M5D7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5D7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FVD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform n=1 Tax=Medicago sativa subsp. x varia RepID=Q9FVD4_MEDSV	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42800

Paralog	Evidence	Comments
Glyma15g02640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g351800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g42800

Limit To All Plant Sequences

>Glyma13g42800.2   sequence type=transcript   gene model=Glyma13g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGTGAGAGAATAACTTAGAAAGAGAAAGGGTGTAGGAGAGAGAGAAATTTTGGTCTTTTATGTGTTGCAATGGTTCAACTGGGAACCCAAAGAGAAGAGAAAAAGAAATTTTATTTCTTTTTTAGACGGGTCTTTGTGAACCTATGATCTTGTGAAAACCCAGAAAGCGATCTTTGATGCACTCATAGGATTGGCCGATTCAGTTGCGTGTTCGGTGGCCGTTGATTTCGTGACAAATGAACGGTGGCGATGAGGTCGTGGCAGCTCCGGCGGGTCCGCCGCACCCTCTGGAGTGGAAATTTTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCAGCTATTGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAGTTTGACTATCTTAAGAGTTTGGAAATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGGAATGGATCTATTGCTAGTTCAAGCAATTCAAGTAGTTCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAGATACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTATTGCTTCTATCTCGGACATAAAATTTGGGAAGGATGGTAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTTTGCGATTTATATGAAAATGACTCAATCTTTGATAAGTTCGAATGTTGTCTAAGTGGTGATGGATTGCGCTTAGCAACTGGTTCTTACAGCAATCTATTTCGTGTGTTTGGTTGTGCTCCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGACGGCTAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAACCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAAAGAGAGATGATTGAAGACAACATGTATCTGCATGGTCATATCATATTGCTGTGGAGAAGGCTGCTTCTTTTCCCATCTTACCAACTACACTGGGTTGGAGAGGCTACATATACACTATTAACTCTCACACTACAAGTGCCCTTCAGAGAGCTTTTAGAGAAAGGATCCAGAAGTGGCTGTTTTCAAATTACTGGATAGGCAGGAGACCTTATTTTGTTACTGGAAAGGCAGCATCTCTCTCCTTTTTTTTTTTCCTCTTCTCCTTTCAATCCTAATATTCTTTCCCTCTATTTCTGTATCTTCTTCTGAAAGAGAAGGTGCAATCAATGTTTCAAATTGTGTTTGGCTTGCAAGTGAAGAAGAAAATGTGATTGTAGCTCTCCTACAACAGATACTAAAGGATGTTCAATATCTGCCACTAGGATTCAGATTAAAAAATGTAGTTTTTCTCTCTCTTTTTTTTGCTCAGATATATCTGTGGGATGGAGCAGTTGAAACCTGCAGTGCATCATTTTTTTATTGATTAATTTTGTGTTGGAATTTAATTTGACATGTTTCAAAGTCTAATTTTGCTGTAGTACCTGTTAATTTTTTGTTAAGAGATAATAATTTTTAGTCTGC

Coding sequences of Glyma13g42800

Limit To All Plant Sequences

>Glyma13g42800.1   sequence type=CDS   gene model=Glyma13g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGGTGGCGATGAGGTCGTGGCAGCTCCGGCGGGTCCGCCGCACCCTCTGGAGTGGAAATTTTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCAGCTATTGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAGTTTGACTATCTTAAGAGTTTGGAAATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGGAATGGATCTATTGCTAGTTCAAGCAATTCAAGTAGTTCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAGATACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTATTGCTTCTATCTCGGACATAAAATTTGGGAAGGATGGTAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTTTGCGATTTATATGAAAATGACTCAATCTTTGATAAGTTCGAATGTTGTCTAAGTGGTGATGGATTGCGCTTAGCAACTGGTTCTTACAGCAATCTATTTCGTGTGTTTGGTTGTGCTCCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGACGGCTAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAACCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA

>Glyma13g42800.2   sequence type=CDS   gene model=Glyma13g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGGTGGCGATGAGGTCGTGGCAGCTCCGGCGGGTCCGCCGCACCCTCTGGAGTGGAAATTTTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCAGCTATTGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAGTTTGACTATCTTAAGAGTTTGGAAATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGGAATGGATCTATTGCTAGTTCAAGCAATTCAAGTAGTTCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAGATACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTATTGCTTCTATCTCGGACATAAAATTTGGGAAGGATGGTAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTTTGCGATTTATATGAAAATGACTCAATCTTTGATAAGTTCGAATGTTGTCTAAGTGGTGATGGATTGCGCTTAGCAACTGGTTCTTACAGCAATCTATTTCGTGTGTTTGGTTGTGCTCCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGACGGCTAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAACCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA

Predicted protein sequences of Glyma13g42800

Limit To All Plant Sequences

>Glyma13g42800.1   sequence type=predicted peptide   gene model=Glyma13g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLANGGSPDRYNYISNDFSFPPGGIPSLRLPMVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRLVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA*

>Glyma13g42800.2   sequence type=predicted peptide   gene model=Glyma13g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLANGGSPDRYNYISNDFSFPPGGIPSLRLPMVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRLVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA*

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