Report for Sequence Feature Glyma13g42650
Feature Type: gene_model
Chromosome: Gm13
Start: 42565116
stop: 42573888
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g42650
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72960 AT
Annotation by Michelle Graham. TAIR10: Root hair defective 3 GTP-binding protein (RHD3) | chr1:27446263-27450862 FORWARD LENGTH=795
SoyBase E_val: 0 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0016817 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides
SoyBase N/A ISS
KOG2203
KOG
GTP-binding protein
JGI ISS
PTHR10751 Panther
GUANYLATE-BINDING PROTEIN
JGI ISS
PTHR10751:SF2 Panther
INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN
JGI ISS
PF05879 PFAM
Root hair defective 3 GTP-binding protein (RHD3)
JGI ISS
UniRef100_B9SN36 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233B0A0 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B0A0 related cluster n=1 Tax=unknown RepID=UPI000233B0A0
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g42650
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g42650
Paralog Evidence Comments
Glyma15g02780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g42650 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g350400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g42650
Coding sequences of Glyma13g42650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g42650.1 sequence type=CDS gene model=Glyma13g42650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAAATGGCGAACAATGAGAAATGTTGTTCCACTCAACTTATTGATGGAGATGGTGCATTCAATGTTGGCGGGATTGAAAACTTCATGAAAGAGGTTAAATTAAGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTCTTAAATAGTTTGTTTTGCACTAACTTCACAGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGAGAGGATGATACTACATTTGAAAAGCAAAGTGCTTTATTTGCTTTGGCTATCTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGTCGCGAACAAGCTGCAAATAAGCCGCTGTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGCGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGATGCTCATAAAGAAACCCCATTAAGTGAATTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCTATCATTCTATCGCTCCAGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCTCAAGAAATCTGGAAAATCATAAAGGAGAACAAGGATCTCGACCTTCCTGCCCACAAGGTAATGGTTGCTACTGTACGATGTGAAGAAATTGCTAACGAGAAATATGACCTTTTTGCTACAAATAAGGATTGGTGTGAGTTGGAAGAGGCTGTGCAATCTGGCCCTATTTCTGGATTTGGCAAAAAGCTCAATTCACTCATTACCACTTGTCTTTCAGAGTATGATGCTGAAGCCAACTATTTTGACGAAGGTGTGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTTCAACTTGTCCAACCAACATTCCAAATTGCGCTGGGACATATAAGGTCCGGAATTTTGGATAAGTTCAAGGAAGCATTTGACAAGGCATTGAATGGAGGGGAAGGGTTTTCATCTGCTGCCAATAAGTGCATAGAGTTTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACATCTAAAGGGAGGGAGAAGCTACAACGTGAAATTGATGCACATGTTGCATCCGTGCGAGCATCTAAGATGTCAGAACTTGTTTCATCATATGAGGAAAAACTAAAGGAGGCCTTGTCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGTTGAACTTATCAGATTTGATGTGGATGAACAACAAAAAAAGAGCATGATTGTGAGTTTAGAGGATTATGCTAAGGGTGTGATAGAAGCCAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATAAGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATGTTCGAGCCATCACCAAGTCTGCCCGCTCTTCCTGCTTGAAGTTGTTGTCTGTAATGGCTGTAATTCGCTTGGATGATGGTGATGACATTTATGACATCGAGAAAACATTAATAGTTGCATTGGCAGATTCATCAAGCAGTTATGCTAAAGATAAGAGCACCATGGCAGTTGAACCACTAGCTTCAAGCACTTGGGATCAGGTACCACCCTCTAAAACATTGATCACACCTGTCCAATGCAAATCCTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTTGGCTATCTTCTCATTAAAGCCCTATGGGCGCAGCTTGACATTACGGGTGAATTTCGCCATGGAGCTCTTCCCGGAATCATCTCCTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACATGGGCGCCATGCAGCTAAGGTTCCCGCTGGTAGAGTTACGTCATCTAGTGCTTCATCTAGTGTAACTTCATCGGGCAATGGAGCCGAGTATACGAGTTCATCAAAATATGAGTAG
Predicted protein sequences of Glyma13g42650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g42650.1 sequence type=predicted peptide gene model=Glyma13g42650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQMANNEKCCSTQLIDGDGAFNVGGIENFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNSLFCTNFTEMDAFKGRSQTTRGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTTFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPDAHKETPLSEFFIVEVVALSSFEEKEEQFKEQVANLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLFATNKDWCELEEAVQSGPISGFGKKLNSLITTCLSEYDAEANYFDEGVRSAKQKQLQEKLFQLVQPTFQIALGHIRSGILDKFKEAFDKALNGGEGFSSAANKCIEFYMAQFDEGCADVVIEIANWDTSKGREKLQREIDAHVASVRASKMSELVSSYEEKLKEALSAPVETLLDGANSDTWPSIRKLLNRETQSAVSGFSVELIRFDVDEQQKKSMIVSLEDYAKGVIEAKAREEAGRVLISMKDRFMTLFSHDSDSMPRIWTGKEDVRAITKSARSSCLKLLSVMAVIRLDDGDDIYDIEKTLIVALADSSSSYAKDKSTMAVEPLASSTWDQVPPSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANNRSRHWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGYLLIKALWAQLDITGEFRHGALPGIISLSSKFVPTIMNLIRKLAEEGHGRHAAKVPAGRVTSSSASSSVTSSGNGAEYTSSSKYE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
