Glyma13g42550 - SoyBase

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Report for Sequence Feature Glyma13g42550

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42499067
stop:	42502133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13810	AT	Annotation by Michelle Graham. TAIR10: indeterminate(ID)-domain 11 \| chr3:4544941-4547300 FORWARD LENGTH=513	SoyBase	E_val: 6.00E-141	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_I1M5B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5B5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HVE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, C2H2-type n=1 Tax=Medicago truncatula RepID=Q2HVE6_MEDTR	SoyBase	E_val: 4.00E-169	ISS

Expression Patterns of Glyma13g42550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42550

Paralog	Evidence	Comments
Glyma15g02840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g349500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g42550

Limit To All Plant Sequences

>Glyma13g42550.1   sequence type=CDS   gene model=Glyma13g42550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAATTCACAAAACTCCAAATATGGGAAAAGATGATGAAGGGTTTGATGTTCCAAAAACCATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGGGCTTCCTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAGCAATACTTTACTCCACCACCAACTCAAACACAGCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGACTCTCTTGGCAACTAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTCCAACTTCACAGAAGAGGACACAATTTACCATGGAAGCTGAAGCAGAGATCAAGCAAAGACATTATAAGGAAGAAGGTGTATGTGTGCCCAGAACCTAGTTGCGTGCACCACGAGCCTTCAAGGGCCCTGGGGGACCTCACTGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGCGATGCATTAGCAGAGGAGAGTGCAAGATCAGTGACAGGCATAGTAGCCAACTCAACAACTCAACCAACTGAAGCAGCAGGAGTAGTGATCTCTTCATCCTCTCTTCATCAAGACATGATCCATGCTAGTAATAATAATTTCCCATTGAAGAAAGAGCAACAAGGTTGCATACCCCATTGGCTTGGGCAACCATCACCCTCTTCTGCTTCATCATCATTCTTGTTCTCTCATCAAGATCATCATCTCCATGAAAACCCTAACCCTAGAGGTGGTCCCACTCTTCTTCCTCCTCCTTACCACCAAACAGCTCCTCACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCCCAAATGGGTGCAACGATGAGCAAAACCGGCTCCATGATTAGGACCCACCAACAGCAGGCTCACGTGTCTGCCAATGCTGCTTTGAATTTGTCCTCACGTGACCACCAGATGAACCCCACTCCCCATGACTTGCTACCTTTCGGGAATAATAAAGCTGTTGATAACGGTGTTGGTGTTTCTCCTTCACTCCTTCATCATGTTATCAATTCTTTCTCTTCTTCCCCCTTTGAAGGGACTTTTGAGGACACTTTTGGTGGTGGCGATGCCATGACCGCCGATGAAGGTGGCGGTGGCGGTGCCGGAGGAAACAATAACGAAGGCTTGACAAGAGATTTCTTGGGTCTTAGACATCTCTCTCACACTGATATCCTCAACATTGCTGGCGTGGGAAACTGCATGAACTCCTCCCAACACAACCAAACCCGAAACCCTTGGCAAGGTTAA

Predicted protein sequences of Glyma13g42550

Limit To All Plant Sequences

>Glyma13g42550.1   sequence type=predicted peptide   gene model=Glyma13g42550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIHKTPNMGKDDEGFDVPKTMSNLTSASGEARASSGNRTEIGTDYSQQYFTPPPTQTQPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKDIIRKKVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIVANSTTQPTEAAGVVISSSSLHQDMIHASNNNFPLKKEQQGCIPHWLGQPSPSSASSSFLFSHQDHHLHENPNPRGGPTLLPPPYHQTAPHMSATALLQKAAQMGATMSKTGSMIRTHQQQAHVSANAALNLSSRDHQMNPTPHDLLPFGNNKAVDNGVGVSPSLLHHVINSFSSSPFEGTFEDTFGGGDAMTADEGGGGGAGGNNNEGLTRDFLGLRHLSHTDILNIAGVGNCMNSSQHNQTRNPWQG*

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