Glyma13g42480 - SoyBase

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Report for Sequence Feature Glyma13g42480

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42460875
stop:	42463904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17640	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:6067394-6069098 REVERSE LENGTH=369	SoyBase	E_val: 3.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4205	KOG	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9S5X3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heterogeneous nuclear ribonucleoprotein A1, putative n=1 Tax=Ricinus communis RepID=B9S5X3_RICCO	SoyBase	E_val: 5.00E-82	ISS
UniRef100_UPI0002262628	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002262628 related cluster n=1 Tax=unknown RepID=UPI0002262628	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42480

Paralog	Evidence	Comments
Glyma15g02890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g348800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g42480

Limit To All Plant Sequences

>Glyma13g42480.1   sequence type=CDS   gene model=Glyma13g42480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTACTATTATGTTTCTCAACACTCGCAATTGGAATCCGAGGCTGATGCCTACAATGTTGATGTCAATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAGAGTCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACTGATTCAGTGATAATGACAAATAAACTTTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCCAATTCAGCTGTTGCAGATGAAGTTTTGGCACAGGAACATACCATTGATCACAGAGTGGTTGAAGTGAAGAGGACAGTCCCAAGGGAGGACGTGGATGTTACTGGAGTATTCAAAACAAAGAAGATATTTGTTGGGGGAATAGCCCAGTTTTTCACTGATGATGAGTTGAGGGAATACTTTTCACCTTATGGCAATGTTATTGAGTGCCAAATCATGCTAGATCACAACACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAAAGGGCTGAGCCCAAAAGATCTGGAGTTGATTACTGCAACACCTCACGAAAGTCATACGGTGGTTTTGGCAATGAAATGGATGGACATGGTGGAAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGGTTCTGGAATGAACGGAGCATATGGTCATTTTGATGGGAGTTTTGGGGGAAGTGCTGCCACTGTTTATGGTGGCTATTGTGGATATGGCTATGAATTTGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGACTCAATTCCTATGGTAATCCTGGGGGTTATGGTAGCGGCATTACTTCCTATGGAGATGTTAATGCATATGGAAGAGCTGGTAGTTTCAATGGCAGTGGTGGCTATGACAGCAGCAAAGTGGCTGAGAAGGGTGATGGTCCTACAACCGGAAGGTACCATCCTTACTGGAAGTGA

Predicted protein sequences of Glyma13g42480

Limit To All Plant Sequences

>Glyma13g42480.1   sequence type=predicted peptide   gene model=Glyma13g42480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYYYVSQHSQLESEADAYNVDVNDEHVKPSFNRRDSFSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFANSAVADEVLAQEHTIDHRVVEVKRTVPREDVDVTGVFKTKKIFVGGIAQFFTDDELREYFSPYGNVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYCNTSRKSYGGFGNEMDGHGGNSSRNRNHGKRGGQYTGSGMNGAYGHFDGSFGGSAATVYGGYCGYGYEFGYGGPMYCFGGYGLNSYGNPGGYGSGITSYGDVNAYGRAGSFNGSGGYDSSKVAEKGDGPTTGRYHPYWK*

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