Glyma13g42460 - SoyBase

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Report for Sequence Feature Glyma13g42460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42453626
stop:	42455734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13898	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). \| chr3:4584011-4584334 FORWARD LENGTH=107	SoyBase	E_val: 5.00E-18	ISS
UniRef100_I1MD06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MD06_SOYBN	SoyBase	E_val: 2.00E-73	ISS
UniRef100_Q2HVD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EPIDERMAL PATTERNING FACTOR-like protein n=1 Tax=Medicago truncatula RepID=Q2HVD2_MEDTR	SoyBase	E_val: 2.00E-42	ISS

Expression Patterns of Glyma13g42460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42460

Paralog	Evidence	Comments
Glyma15g02921	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g348600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g42460

Limit To All Plant Sequences

>Glyma13g42460.2   sequence type=transcript   gene model=Glyma13g42460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATTATTGAAGACATTCCAAACAAGTTCAGGTCTATGAAATTAATCTCAAAATCAAGCTGAGCCCGTCTCATAAACATGTATAGCTTGGACTAATGGTAATGGGACCATAGTAAATAGTAGTAGTAGTAGTTTATTTGAGTCTAGAGTAACTAGCTAGAATCTGTTATGTGGGAAAATAGGCAGCAGGGGATGAGGGGCGCCCAAATTTAATGTCATATAAACGAATGGTCCAGATTTTGGATATTGGTGAAGAGATTTGCCTGTTCCCCAGCAACCAACTCGAAGAAAAGTTGACCCTAGTACCACATTAATCCATTTAACTAACTCAATAAATATTACAGTATATTTGTTGCTTTTATTTTTTTCTTCTCCCGCATTATAGATGTAACTGCCACCCTGCCATTGATTTCTTTCTTCCGTATATGGCAACGAAATTAAAAGCATCACTACAAGACAAAGGCTCTGCAGTCTAGATATCAATATCATTATTTTAATCTGAAATATCAGAAAAATTATGAGGGTCTTGCAGGTGTTTCAGGCCCAAAATGGGTGCTGTTATTCTGCACTTGTGATCACCGTATATAGTGTCTTACTTTTAGATTGATTTGAGAGAGAGACTTGTTTGGCTTGTATTGAAAGGTAAGCAATCCAAGGTTAGAGGCTGAAAGAGAGTGGAAAAACAGACTAGTCTTAGGAGTGAGGTATCGAATGAAGGTGAAACTTGCTCAAGTGAAGAAGCAAAATCACTTGCTTGTGAAGAAGCTCACAAAATCTCTTGCAAGTTTGGAGGCTCTGAGCCTTGTTTTTGGGAATTGCAAGCTAAGCAGGTTTAACTTAGTAGCTAGCCTTTCTCTCCCTTCTTATATATATTTTCCACTATTCAGCAATCAATCATCATGCCTAATTGCCTCTTGTTGTGAAGATTCACATCATCATCATCATCATCACATATTCATCATTTGAGGTTTTGAAAGAGAAGAAAAAATGAAAGCAACATTCTGTTTTTTTCTGCTAGCTCTACTAATAGTGAGTTGGGAATCTGCAGTAGTAGTAGCAAGGAGGCCCTTCCCTTCAACCGATGGAATGTGCCATCCAGGCCCCAAAGCGGCACCAGGACCAGGGCCCGTGTCTTCACCATCTAATACTGTAGAGTCAGAAAAGGGTTTAATGGAAGAAGCATACTCATATAGAGTGAGCAAAATAGGGTCAAGTCCACCAAGTTGTGAGCACAAGTGTTATGGTTGCACTCCATGTGAAGCGATTCAAGTGCCGAGCACCAGCAGCTGGCGCAGTCATTTGGGGTTGCAGTACACAAATTATGAGCCCGAGAGTTGGAAATGCAAGTGTGGTCCTTCCCTCTATAGCCCGTGAACGTGAATCAATATACTATGTAACTATGTTCTTGTTCATACCCATTTAATATAGTTGATGTATAATCAATGATCTCCTATCTGTCTCTCACCTTCATATTTATAGTTCCCTCGTGTACAAACATCAATTCAAAGGATTTTATTATGTCATAGTTGTGACTACAATGCAAATGCCAACTTATCTATAAA

Coding sequences of Glyma13g42460

Limit To All Plant Sequences

>Glyma13g42460.1   sequence type=CDS   gene model=Glyma13g42460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCCATCCAGGCCCCAAAGCGGCACCAGGACCAGGGCCCGTGTCTTCACCATCTAATACTGTAGAGTCAGAAAAGGGTTTAATGGAAGAAGCATACTCATATAGAGTGAGCAAAATAGGGTCAAGTCCACCAAGTTGTGAGCACAAGTGTTATGGTTGCACTCCATGTGAAGCGATTCAAGTGCCGAGCACCAGCAGCTGGCGCAGTCATTTGGGGTTGCAGTACACAAATTATGAGCCCGAGAGTTGGAAATGCAAGTGTGGTCCTTCCCTCTATAGCCCGTGA

>Glyma13g42460.2   sequence type=CDS   gene model=Glyma13g42460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCAACATTCTGTTTTTTTCTGCTAGCTCTACTAATAGTGAGTTGGGAATCTGCAGTAGTAGTAGCAAGGAGGCCCTTCCCTTCAACCGATGGAATGTGCCATCCAGGCCCCAAAGCGGCACCAGGACCAGGGCCCGTGTCTTCACCATCTAATACTGTAGAGTCAGAAAAGGGTTTAATGGAAGAAGCATACTCATATAGAGTGAGCAAAATAGGGTCAAGTCCACCAAGTTGTGAGCACAAGTGTTATGGTTGCACTCCATGTGAAGCGATTCAAGTGCCGAGCACCAGCAGCTGGCGCAGTCATTTGGGGTTGCAGTACACAAATTATGAGCCCGAGAGTTGGAAATGCAAGTGTGGTCCTTCCCTCTATAGCCCGTGA

Predicted protein sequences of Glyma13g42460

Limit To All Plant Sequences

>Glyma13g42460.1   sequence type=predicted peptide   gene model=Glyma13g42460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCHPGPKAAPGPGPVSSPSNTVESEKGLMEEAYSYRVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSWRSHLGLQYTNYEPESWKCKCGPSLYSP*

>Glyma13g42460.2   sequence type=predicted peptide   gene model=Glyma13g42460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKATFCFFLLALLIVSWESAVVVARRPFPSTDGMCHPGPKAAPGPGPVSSPSNTVESEKGLMEEAYSYRVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSWRSHLGLQYTNYEPESWKCKCGPSLYSP*

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