Report for Sequence Feature Glyma13g42440
Feature Type: gene_model
Chromosome: Gm13
Start: 42441870
stop: 42445047
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g42440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72670 AT
Annotation by Michelle Graham. TAIR10: IQ-domain 8 | chr1:27356898-27358657 REVERSE LENGTH=414
SoyBase E_val: 1.00E-85 ISS
GO:0000226 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization
SoyBase N/A ISS
GO:0000911 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PTHR13140 Panther
MYOSIN
JGI ISS
PTHR13140:SF72 Panther
MYOSIN-IX A, B
JGI ISS
PF00612 PFAM
IQ calmodulin-binding motif
JGI ISS
UniRef100_G7IS48 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IS48_MEDTR
SoyBase E_val: 8.00E-155 ISS
UniRef100_I1M5A6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5A6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g42440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g42440
Paralog Evidence Comments
Glyma15g02940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g42440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g348400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g42440
Transcripts of Glyma13g42440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g42440.3 sequence type=transcript gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTTGAATCCTACATTTCCAAATGTGTATCCTGTACCCTCCATTTGTGTTTGAAAATATCAAATACTCTTCTCCAATCCTAGCACCTTTCTTTTGGTGCCAATTACTCCCAGAGCGATACCTCCTCTTCACCCGTAACAACAACTTCTTCTCCCACAAGTTCACCTTTTTCACAGTAGTCTAGCGACCTCCTCCTCACAAGTCACAACACCATAGAACATCCTCCCCCTCTTCCTTCCTTTGCGCGTCCCTATTGAAGGCTATTATTATAAAACATCTATTCTCAAATGCGAAAGAACATGAGCCGTGGCGTTGTGAAGAGGGTGTGAGGGGAAGAAGGTGGCGCGGGACAAGGAGGAGCCGTTGTGAGAGCTACCATGGCAGGTTGGATGGTTTCCGAAGGAGAGAGGTGTTAGGGTTGAGAAAGGAGGTATTAATTCATTAACGGTGGTTTAGCTAGTGATAGGGTCAAATTGGAGCGTGCGTGGGAAATAAACAAAGAAAAAGTGCTTCACAGCAGAAGCTACCTCTCCTCTTACTCGCTCCGTTTGCTCAGCAAAACGGTTTCTTTTCTCCAATGGGTGCTTCGGGAAGGTGGTTTAAGTCACTTCTTCCTTTTAGAAAGACCTCAACTGATCAAGAGAAGGGTGGTGACAACAAGAGTAAGAAGAAGCGGAAGCTATGGAGGGCATCTTCAGAAGGGTCCATGAAGAATGTTGGTGGTGGTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCGGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTAGTAAGGCTACAAGCTATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCTGTTACTCTGAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCACGTGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCTGTGCAGAAATTACTGGATGAGCATCACAACCACGCTGATCCTTTTAATCTAATTGAGCAAGGATGGTGTGACATTCCTGGAACTATGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACTCAGTCAAGACTGTGTGCTAGTCCAAACCCAAAAGCCACTAAGGCATTGACTCCTGTCAAGCATAACAACCCAAGCAACAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAATCTCTAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGATTTCAGTTAAGCCTATTATAACCAGTCAATCGACTTCACCATCTTCGGCCATGAGCTCTGAGTACATGTGTGATGATAATAGCCCTGTGTCAACATCTTATACCTCTGGATCTCTATCCTTGCCATCCACCAACACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAGCCAAGCTACATGAATTTGACAGAATCAACTAAGGCTAAACTTAAAGCCTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTAATGGAGGACACAGTGTCTCACAATCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAAGCAGTTTTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCGACACCTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGAGTTTCTGTAACAGTGGCAGATGTGTTGTTTACTTTCAATGAGTTCAACAGCTTGTTGTCCGTAGTCAAGACCTTGACAAATTAGGATGAGTTTCTGTAACAGTGGCAGATGTGCAAGTTAGGATAGAGGGCTAATTGGCTGTGTAGATAACATAAGTGGTTTTGTTTTATTTTGTGTGAAGAATGAAATAGCAAACTAGTACACTACTTCAATCTGTATGGTGCTTTGTACACTAATATATGGTTTATGTATGAATTATCTAACTCGAGTAGAAATCGAGCTTTTTATCGATGCATTGCCGTTTTTGTTTCCCACAT
>Glyma13g42440.4 sequence type=transcript gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTTGAATCCTACATTTCCAAATGTGTATCCTGTACCCTCCATTTGTGTTTGAAAATATCAAATACTCTTCTCCAATCCTAGCACCTTTCTTTTGGTGCCAATTACTCCCAGAGCGATACCTCCTCTTCACCCGTAACAACAACTTCTTCTCCCACAAGTTCACCTTTTTCACAGTAGTCTAGCGACCTCCTCCTCACAAGTCACAACACCATAGAACATCCTCCCCCTCTTCCTTCCTTTGCGCGTCCCTATTGAAGAACATGAGCCGTGGCGTTGTGAAGAGGGTGTGAGGGGAAGAAGGTGGCGCGGGACAAGGAGGAGCCGTTGTGAGAGCTACCATGGCAGGTTGGATGGTTTCCGAAGGAGAGAGGTGTTAGGGTTGAGAAAGGAGGTATTAATTCATTAACGGTGGTTTAGCTAGTGATAGGGTCAAATTGGAGCGTGCGTGGGAAATAAACAAAGAAAAAGTGCTTCACAGCAGAAGCTACCTCTCCTCTTACTCGCTCCGTTTGCTCAGCAAAACGGTTTCTTTTCTCCAATGGGTGCTTCGGGAAGGTGGTTTAAGTCACTTCTTCCTTTTAGAAAGACCTCAACTGATCAAGAGAAGGGTGGTGACAACAAGAGTAAGAAGAAGCGGAAGCTATGGAGGGCATCTTCAGAAGGGTCCATGAAGAATGTTGGTGGTGGTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCGGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTAGTAAGGCTACAAGCTATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCTGTTACTCTGAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCACGTGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCTGTGCAGAAATTACTGGATGAGCATCACAACCACGCTGATCCTTTTAATCTAATTGAGCAAGGATGGTGTGACATTCCTGGAACTATGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACTCAGTCAAGACTGTGTGCTAGTCCAAACCCAAAAGCCACTAAGGCATTGACTCCTGTCAAGCATAACAACCCAAGCAACAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAATCTCTAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGATTTCAGTTAAGCCTATTATAACCAGTCAATCGACTTCACCATCTTCGGCCATGAGCTCTGAGTACATGTGTGATGATAATAGCCCTGTGTCAACATCTTATACCTCTGGATCTCTATCCTTGCCATCCACCAACACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAGCCAAGCTACATGAATTTGACAGAATCAACTAAGGCTAAACTTAAAGCCTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTAATGGAGGACACAGTGTCTCACAATCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAAGCAGTTTTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCGACACCTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGAGTTTCTGTAACAGTGGCAGATGTGTTGTTTACTTTCAATGAGTTCAACAGCTTGTTGTCCGTAGTCAAGACCTTGACAAATTAGGATGAGTTTCTGTAACAGTGGCAGATGTGCAAGTTAGGATAGAGGGCTAATTGGCTGTGTAGATAACATAAGTGGTTTTGTTTTATTTTGTGTGAAGAATGAAATAGCAAACTAGTACACTACTTCAATCTGTATGGTGCTTTGTACACTAATATATGGTTTATGTATGAATTATCTAACTCGAGTAGAAATCGAGCTTTTTATCGATGCATTGCCGTTTTTGTTTCCCACAT
Coding sequences of Glyma13g42440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g42440.2 sequence type=CDS gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTTCGGGAAGGTGGTTTAAGTCACTTCTTCCTTTTAGAAAGACCTCAACTGATCAAGAGAAGGGTGGTGACAACAAGAGTAAGAAGAAGCGGAAGCTATGGAGGGCATCTTCAGAAGGGTCCATGAAGAATGTTGGTGGTGGTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCGGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTAGTAAGGCTACAAGCTATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCTGTTACTCTGAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCACGTGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCTGTGCAGAAATTACTGGATGAGCATCACAACCACGCTGATCCTTTTAATCTAATTGAGCAAGGATGGTGTGACATTCCTGGAACTATGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACTCAGTCAAGACTGTGTGCTAGTCCAAACCCAAAAGCCACTAAGGCATTGACTCCTGTCAAGCATAACAACCCAAGCAACAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAATCTCTAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGATTTCAGTTAAGCCTATTATAACCAGTCAATCGACTTCACCATCTTCGGCCATGAGCTCTGAGTACATGTGTGATGATAATAGCCCTGTGTCAACATCTTATACCTCTGGATCTCTATCCTTGCCATCCACCAACACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAGCCAAGCTACATGAATTTGACAGAATCAACTAAGGCTAAACTTAAAGCCTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTAATGGAGGACACAGTGTCTCACAATCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAAGCAGTTTTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCGACACCTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGA
>Glyma13g42440.3 sequence type=CDS gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTTCGGGAAGGTGGTTTAAGTCACTTCTTCCTTTTAGAAAGACCTCAACTGATCAAGAGAAGGGTGGTGACAACAAGAGTAAGAAGAAGCGGAAGCTATGGAGGGCATCTTCAGAAGGGTCCATGAAGAATGTTGGTGGTGGTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCGGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTAGTAAGGCTACAAGCTATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCTGTTACTCTGAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCACGTGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCTGTGCAGAAATTACTGGATGAGCATCACAACCACGCTGATCCTTTTAATCTAATTGAGCAAGGATGGTGTGACATTCCTGGAACTATGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACTCAGTCAAGACTGTGTGCTAGTCCAAACCCAAAAGCCACTAAGGCATTGACTCCTGTCAAGCATAACAACCCAAGCAACAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAATCTCTAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGATTTCAGTTAAGCCTATTATAACCAGTCAATCGACTTCACCATCTTCGGCCATGAGCTCTGAGTACATGTGTGATGATAATAGCCCTGTGTCAACATCTTATACCTCTGGATCTCTATCCTTGCCATCCACCAACACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAGCCAAGCTACATGAATTTGACAGAATCAACTAAGGCTAAACTTAAAGCCTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTAATGGAGGACACAGTGTCTCACAATCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAAGCAGTTTTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCGACACCTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGA
>Glyma13g42440.4 sequence type=CDS gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTTCGGGAAGGTGGTTTAAGTCACTTCTTCCTTTTAGAAAGACCTCAACTGATCAAGAGAAGGGTGGTGACAACAAGAGTAAGAAGAAGCGGAAGCTATGGAGGGCATCTTCAGAAGGGTCCATGAAGAATGTTGGTGGTGGTGGTGCTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCGGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTAGTAAGGCTACAAGCTATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCTGTTACTCTGAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCACGTGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCTGTGCAGAAATTACTGGATGAGCATCACAACCACGCTGATCCTTTTAATCTAATTGAGCAAGGATGGTGTGACATTCCTGGAACTATGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACTCAGTCAAGACTGTGTGCTAGTCCAAACCCAAAAGCCACTAAGGCATTGACTCCTGTCAAGCATAACAACCCAAGCAACAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAATCTCTAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGATTTCAGTTAAGCCTATTATAACCAGTCAATCGACTTCACCATCTTCGGCCATGAGCTCTGAGTACATGTGTGATGATAATAGCCCTGTGTCAACATCTTATACCTCTGGATCTCTATCCTTGCCATCCACCAACACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAGCCAAGCTACATGAATTTGACAGAATCAACTAAGGCTAAACTTAAAGCCTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTAATGGAGGACACAGTGTCTCACAATCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAAGCAGTTTTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTCTTGTGCGACACCTCTAAGGGCAAGTTATCAAAAACGACAAATTAGGATATGA
Predicted protein sequences of Glyma13g42440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g42440.2 sequence type=predicted peptide gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGASGRWFKSLLPFRKTSTDQEKGGDNKSKKKRKLWRASSEGSMKNVGGGGAAAASDSSLTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDEHHNHADPFNLIEQGWCDIPGTMDEVKAKLRMRQEGAIKRDRAMAYSLSTQSRLCASPNPKATKALTPVKHNNPSNKSLGYSLLERWMEAKPWESPISRKSEDLVPAFQSRRNGMTTRISVKPIITSQSTSPSSAMSSEYMCDDNSPVSTSYTSGSLSLPSTNTVLVEATEERDVHQPSYMNLTESTKAKLKACRSSSQNSKRLVMEDTVSHNHSTTTGLMNGDTRSSFDSDPSVNLWKDSCATPLRASYQKRQIRI*
>Glyma13g42440.3 sequence type=predicted peptide gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGASGRWFKSLLPFRKTSTDQEKGGDNKSKKKRKLWRASSEGSMKNVGGGGAAAASDSSLTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDEHHNHADPFNLIEQGWCDIPGTMDEVKAKLRMRQEGAIKRDRAMAYSLSTQSRLCASPNPKATKALTPVKHNNPSNKSLGYSLLERWMEAKPWESPISRKSEDLVPAFQSRRNGMTTRISVKPIITSQSTSPSSAMSSEYMCDDNSPVSTSYTSGSLSLPSTNTVLVEATEERDVHQPSYMNLTESTKAKLKACRSSSQNSKRLVMEDTVSHNHSTTTGLMNGDTRSSFDSDPSVNLWKDSCATPLRASYQKRQIRI*
>Glyma13g42440.4 sequence type=predicted peptide gene model=Glyma13g42440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGASGRWFKSLLPFRKTSTDQEKGGDNKSKKKRKLWRASSEGSMKNVGGGGAAAASDSSLTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDEHHNHADPFNLIEQGWCDIPGTMDEVKAKLRMRQEGAIKRDRAMAYSLSTQSRLCASPNPKATKALTPVKHNNPSNKSLGYSLLERWMEAKPWESPISRKSEDLVPAFQSRRNGMTTRISVKPIITSQSTSPSSAMSSEYMCDDNSPVSTSYTSGSLSLPSTNTVLVEATEERDVHQPSYMNLTESTKAKLKACRSSSQNSKRLVMEDTVSHNHSTTTGLMNGDTRSSFDSDPSVNLWKDSCATPLRASYQKRQIRI*