Glyma13g42420 - SoyBase

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Report for Sequence Feature Glyma13g42420

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42419924
stop:	42423313
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72880	AT	Annotation by Michelle Graham. TAIR10: Survival protein SurE-like phosphatase/nucleotidase \| chr1:27423678-27425928 REVERSE LENGTH=385	SoyBase	E_val: 2.00E-172	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PF01975	PFAM	Survival protein SurE	JGI		ISS
UniRef100_C6TGC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGC8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7IS42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 5'-nucleotidase surE n=1 Tax=Medicago truncatula RepID=G7IS42_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42420

Paralog	Evidence	Comments
Glyma15g02970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g136600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g42420

Limit To All Plant Sequences

>Glyma13g42420.1   sequence type=CDS   gene model=Glyma13g42420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCCCCCGGGACTCGTTTCCAATCTCCAAGAAGTGCTTCTCAACCGAAAAGGCGATTCCAATTCGAATTCGAATTCAAATAATGCAGAGCAGCATGAACAATCCAGCGAGAACTCGGAGCCTGTTGAATTCGACGCCTCGAAGCCAATTGTGTTGGTGACGAACAGTGATGGCGTCGAATCCCCTGGCCTCACGCACCTCGTTGAAGCTCTCGTTCAACAAGGCCTTTACAATGTCCACGTCTGCGTTCCTCAATCGGACAAATCGGTTTCGGCGCACTCCGTAACGCTCCGAGAAACTATTGAAGCTGCTTCTGCCAAAATTAGTGGCGCCACCGCCTTTGAGATTTCAGGAACTCCTGTGGATTGTGTTTCGCTAGCGTTATCTGGAGCGTTGTTTTCGTGGTCTAAGCCTATGCTGGTTATTAGTGGGATTAACCGCGGATCAAACTGTGGTCATCACATGTTCTACTCAGGGGTTGTTGCCGGAGCTAGGGAAGCGTTGTTATGTGGTGTACCGGCATTATCAATATCATTAAATTGGAAGAAGGATGAAAGTCAGGAAAACGATTTCAAGGATGCTGTATCAGTCTGTTTACCATTAATAAACACAGCTATTAGGGATGTTGAAAAGGGAACTTTTCCCAAAAGCTGCCTTTTAAATGTAGAAATTCCGACATCTCCTTTGAGTAACAAGGGCTTCAAATTAACCAAGCAAAGTATGTGGAGATCCACTCCAAACTGGCTAGCTGTTTCCACCAGCCGTTATCCAACTGGTCATTTCTTGGCCAATCAAGGGGGCCTTGGTCTTCAGTTTGCACAGCTTGGCCGAGATGCTTCTGCAGCTGGTGCAGCTCGTCGATTGGCTACACAGAAGAAGAATTTGGAGATTATTGAATCAATGGGAGCTGCAGGGAAATCTGATCCCAACAGGGTGAAGAAGTATTTCAGACTAGAGTTTCTGGACAATCAGCAGGAGGAAGAAGTAGACGAAGATCTGGATTACAGAGCACTTGAAAGTGGATATGTCGCAGTGACTCCGCTGTCTATTTCTCCTCATATTGAGACTGTTATTCAAATGGCAGCTTCTGATTGGATTTCTGCTGTGCTTCCTGGTGAACAATAA

Predicted protein sequences of Glyma13g42420

Limit To All Plant Sequences

>Glyma13g42420.1   sequence type=predicted peptide   gene model=Glyma13g42420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMPPGLVSNLQEVLLNRKGDSNSNSNSNNAEQHEQSSENSEPVEFDASKPIVLVTNSDGVESPGLTHLVEALVQQGLYNVHVCVPQSDKSVSAHSVTLRETIEAASAKISGATAFEISGTPVDCVSLALSGALFSWSKPMLVISGINRGSNCGHHMFYSGVVAGAREALLCGVPALSISLNWKKDESQENDFKDAVSVCLPLINTAIRDVEKGTFPKSCLLNVEIPTSPLSNKGFKLTKQSMWRSTPNWLAVSTSRYPTGHFLANQGGLGLQFAQLGRDASAAGAARRLATQKKNLEIIESMGAAGKSDPNRVKKYFRLEFLDNQQEEEVDEDLDYRALESGYVAVTPLSISPHIETVIQMAASDWISAVLPGEQ*

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