SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63870 | AT | Annotation by Michelle Graham. TAIR10: serine/threonine phosphatase 7 | chr5:25561336-25562908 REVERSE LENGTH=413 | SoyBase | E_val: 1.00E-140 | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009785 | GO-bp | Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG0374 | KOG | Serine/threonine specific protein phosphatase PP1, catalytic subunit | JGI | ISS | |
| PTHR11668 | Panther | SERINE/THREONINE PROTEIN PHOSPHATASE | JGI | ISS | |
| PTHR11668:SF7 | Panther | SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED | JGI | ISS | |
| PF00149 | PFAM | Calcineurin-like phosphoesterase | JGI | ISS | |
| UniRef100_G7IS41 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Medicago truncatula RepID=G7IS41_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B240 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B240 related cluster n=1 Tax=unknown RepID=UPI000233B240 | SoyBase | E_val: 0 | ISS |
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Glyma13g42411 not represented in the dataset |
Glyma13g42411 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g02980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g348300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g42411.1 sequence type=CDS gene model=Glyma13g42411 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCCCCGCAAAGAGAGAATAAAGAATGGGTGCCTGAAGATTTTGGAAGGAATAAATTCAATGTCTTTGGTAAATTTAGATGACCAGCAAGTCCATTCCTTAGTGATGATGAGAGAAATAGCACGTGGGGTTGTTGATGATCGAGATAGAAAGGTTACTAAAAGTGATGTGATCACTGCATTGCGCCACAGCATTGAGAAAATGGTGTGTGCATCCAGGGATATCATTCAAATATTAAGTAGGATGTCCTTTGAAGGCTTGGATGACCAGAGCATGCATTTAGTCATGAGGATGAAAGAAATTGCAAATGGGGTTATTGATAAGCAACCTAGAGTTGCAATAACTAGGCCTGACTTACTTGCTGAACAAGTTGGATTTGTGGATGAAGGGATGAGAGATAGTCCCGTGGTTGAGTCAACCAAGATCAGCAATGGGTATGTTCCGATTGGCGGGGCACAGAGCATGACTAATGAAGATGAGATGTTGGATGTGGAACATGTTTTAAGATTTGAAAATGGGATAGATGAAGTTCACGAGTCTTTGTTACCTTGTTTTCAGCAGTTTCTTCTGTGGCCACCTGATGATTGTGTCACCTTAGAGTGGGTTCAGGACATGATGGTCATCCTTGAGCAGGCTTCACAGAAGATGTTGCCATCTGAATTCTGTCATATCGTGCCGGCCATTTTGGTGGACAAATTGGCAGATGCTGCTTGCAGTATTTTATGTAAAGAACCAAACTGTGTGGAGATTAATTGTCAAGGAGAAGATTCAAAAGTAATTGTAGTAGGCGATGTACATGGGCAGTTTCATGATTTAATGTTTCTTTTCAAGCATGCAGGGGTTCCCTCTGAGAACCGGATTTATGTTTTTAATGGAAATTATGTAGATAAGGGAGCTTGGGGAATTGAAGTATTTTTGTTCTTGCTGGCTTGGAAGGTCTTGATGCCTCATAGAGTATATCTACTTCGTGGGAATCATGAATCAAGATATTGCACTGCAAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGTGATCAAGGTGAAGATGTCTACAATAAATTCCTAGCATGTTTTAAGGAGCTTCCATTAGCTTCAGTTATTGCCAATTGTGTTTATACTACTCATGGAGGACTTTTCCGTAGTATACACGCAGCCCCTTCACAGAAACCGAAACGAAATAAAACACACAGGGTGGATCTCGGCTCTTTAGCTGAGTTATCTGAAGTTAAAAGATCTTTTGTAGATTGCCCTTATGAAGGTCCTAATATATTATTGAGTGATGTTCTCTGGTCAAGACCATCTAACAGGGATGGTCTGAGGGATAATACAGGTCAAAAGTTAGGTTTATTGTGGGGTCCTGATTGCACTGAGGCATTCTTAAAGCAGTACAATTTAAAGCTGATTATCAGATCACATGAAGGACCAGACGCAAGGGCTGGTAGAGATGATGATTTTGGGGACATGCTAAGTGGATACAGCATAGATCATGATGGAGAATCGGGAAGACTGTATACTCTTTTTAGTGCTCCAGACTATCCACAGTTTGGTAAAAGGAGATATAACAATAAGGGGGCATATGCAGTGTTGAAGTCGCCTGATTTTGCCAGCCCTTCGTTTCACTCATTCAAAGCAGCAGAAAGACCAATGGTGGATCCTTACTTTGATTTTGATGCCAATTATATGGAATCGAGTAAACTAGACTCTTCTCAAAGTGCCTCAACCTCTACCCTTTCTGCTCCTCAAAGATTTTATTCAGATGGGATGAGACCTGAGTTTGACTTTGGGGCATTAGGCATATACAATGCCCCAGGTTGGAGGGTTGAGCTTCCTGATGGTTCAGGAGGTACTCAAGCTGTTGAGGTTCCAAGGGCACCATTGGCGGAAGGATTGCCTCTGCCTCCAAACATACAGGAGCCACACAAGGCTGCTTATGAGTATTTGTTTGAGCTAGTTGCTGGCCTGAAACATATGATTGTAACAAGGGAGACTGAGAACAGGGCCCCTGTGTCTGCTTTGAGAAGTAGAACTAGGAAACGAGAAGGTAAGGGTAACTCATAG
>Glyma13g42411.1 sequence type=predicted peptide gene model=Glyma13g42411 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPRKERIKNGCLKILEGINSMSLVNLDDQQVHSLVMMREIARGVVDDRDRKVTKSDVITALRHSIEKMVCASRDIIQILSRMSFEGLDDQSMHLVMRMKEIANGVIDKQPRVAITRPDLLAEQVGFVDEGMRDSPVVESTKISNGYVPIGGAQSMTNEDEMLDVEHVLRFENGIDEVHESLLPCFQQFLLWPPDDCVTLEWVQDMMVILEQASQKMLPSEFCHIVPAILVDKLADAACSILCKEPNCVEINCQGEDSKVIVVGDVHGQFHDLMFLFKHAGVPSENRIYVFNGNYVDKGAWGIEVFLFLLAWKVLMPHRVYLLRGNHESRYCTARYGFKKEVWAKYGDQGEDVYNKFLACFKELPLASVIANCVYTTHGGLFRSIHAAPSQKPKRNKTHRVDLGSLAELSEVKRSFVDCPYEGPNILLSDVLWSRPSNRDGLRDNTGQKLGLLWGPDCTEAFLKQYNLKLIIRSHEGPDARAGRDDDFGDMLSGYSIDHDGESGRLYTLFSAPDYPQFGKRRYNNKGAYAVLKSPDFASPSFHSFKAAERPMVDPYFDFDANYMESSKLDSSQSASTSTLSAPQRFYSDGMRPEFDFGALGIYNAPGWRVELPDGSGGTQAVEVPRAPLAEGLPLPPNIQEPHKAAYEYLFELVAGLKHMIVTRETENRAPVSALRSRTRKREGKGNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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