SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54270 | AT | Annotation by Michelle Graham. TAIR10: eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=412 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0328 | KOG | Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily | JGI | ISS | |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_E5GB87 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Helicase n=1 Tax=Cucumis melo subsp. melo RepID=E5GB87_CUCME | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001B34290 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B34290 related cluster n=1 Tax=unknown RepID=UPI0001B34290 | SoyBase | E_val: 0 | ISS |
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Glyma13g42360 not represented in the dataset |
Glyma13g42360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g03020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g347900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g42360.1 sequence type=CDS gene model=Glyma13g42360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGTTTGGCTCCAGAAGGATCGCAGTTTGATGCTCGGCAATATGATTCTAAGATGAATGAATTGCTTTCCGCCGATGGACAAGAATTTTTCACTTCATATGACGAAGTCTATGATAGTTTTGATGCAATGGGCCTTCAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAGAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCAACGTTCTGTTCAGGAATTTTGCAGCAGCTTGACTATGGATTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTTGCACAGCAGATTGAGAAGGTTATGCGAGCTCTAGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGTGTATTTGACATGCTACGGAGACAGTCTCTTCGTCCAGATCACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCTTGGAGATTACGAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAACAGTTTTATGTGAATGTTGATAAGGAAGACTGGAAACTAGAGACATTATGTGACCTTTATGAGACTTTGGCTATCACCCAGAGTGTCATCTTTGTGAACACAAGGCGTAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGACATCATCATGCGGGAATTTCGCTCTGGCTCTTCTCGAGTTCTAATTACCACTGACCTCTTGGCTCGTGGTATAGATGTACAGCAGGTGTCTTTGGTTATAAACTATGATCTGCCAACCCAACCTGAAAATTATCTTCATCGCATAGGACGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCCATAAACTTTGTGACTTTGGATGATGCAAGAATGCTGTCTGATATTCAAAAGTTCTACAATGTGACTGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTCTGA
>Glyma13g42360.1 sequence type=predicted peptide gene model=Glyma13g42360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGLAPEGSQFDARQYDSKMNELLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGQIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVTVEELPSNVADLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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