Glyma13g42230 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g42230

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42273383
stop:	42282805
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54170	AT	Annotation by Michelle Graham. TAIR10: CTC-interacting domain 3 \| chr1:20221353-20224919 REVERSE LENGTH=587	SoyBase	E_val: 8.00E-140	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2375	KOG	Protein interacting with poly(A)-binding protein	JGI		ISS
PTHR12854	Panther	ATAXIN 2-RELATED	JGI		ISS
PF06741	PFAM	LsmAD domain	JGI		ISS
PF07145	PFAM	Ataxin-2 C-terminal region	JGI		ISS
UniRef100_G7IS20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ataxin-2 n=1 Tax=Medicago truncatula RepID=G7IS20_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M589	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M589_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42230

Paralog	Evidence	Comments
Glyma15g03190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g346900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g42230

Limit To All Plant Sequences

>Glyma13g42230.4   sequence type=transcript   gene model=Glyma13g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACTAGATAATTTCTTAGTTGGTTTTATTTTGGGTGTTTCTGCTTCGTTGCGGTCTCGCTCTCTCTCTCTCTCCGGCCACTTCATCCTCCCACCGAAGCAGCCCCTCAACCAATCCCTAACAGACGCAACCTTCTCTCTTCAGCTCCTCTTTTCAACCTCTGCCGGAATCCACCAATTAGGTTCCGATCAACCTCTCACAGGGTTTTAAATTATGGAAATTCCGATAAATGTTGTATTACTGAAATCAACAAGAGCTTCAAATAGGTTGGCAATGTAGAGGGTTGATGCCCAACATGTATGCCTTGGGGACTCCGAACAGATGAGGGAAAGTCCCCAATATGTGACTGCAAGTCCTCCTAGAATCTCTGCCAATGTTAGAGGGGAAGGGGCTGTAAGTGAGGATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTTGTTGGCAAGTCAAATCCTTGCTTGAAAAGAATAAACTAAGTGGTTGTCCTGAAAAGTTTTAAACGAGGATATCTGCAGCTGATGGAAAAATCTCTAAAGGCTTATATTATATATTACTGCCAGGTTCGCTAATTCTGGGATATAATTTTATGACCTTGTGTTAACCCATACATCTTTTGGGGTTTCTCAGGCTTTGGCCGTGCGATAGATTAACTCAGATTGACCTTTTCCATCCCTCTCTTTTTAACTCTTTAATGCCATGAAAAATTTACTTTTTATAACTTTGCTCATTCATCCGACACTCTCCAACCATTGGGTTGTTGCCATGTTATATTTTTTACTGGTAAAATTCTTATATCCTTTTAATGATTTTATCATTTCACAAATTATTTTAATTTTGGATGGCTTTAGATGTGTGGCATTTCAACGTT

Coding sequences of Glyma13g42230

Limit To All Plant Sequences

>Glyma13g42230.3   sequence type=CDS   gene model=Glyma13g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGA

>Glyma13g42230.4   sequence type=CDS   gene model=Glyma13g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGA

Predicted protein sequences of Glyma13g42230

Limit To All Plant Sequences

>Glyma13g42230.3   sequence type=predicted peptide   gene model=Glyma13g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLQQAGQPKSSNGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESPSHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKSGTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVDLGRELKPWVPDEEDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDSGFDEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQSCQSNTCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITKEENPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLIEGSASGKANGETKSVNSRGIPSGSDLVGGIAASSVPGLSPSSSVCSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPTNVTTVPSMPGMPVGIGIGPTFAGPQPIIYNPQVAQMPSQGYFHPNAPQYGQLLGHPRQSLYMPSYLPEMQYKGRDY*

>Glyma13g42230.4   sequence type=predicted peptide   gene model=Glyma13g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLQQAGQPKSSNGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESPSHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKSGTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVDLGRELKPWVPDEEDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDSGFDEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQSCQSNTCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITKEENPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLIEGSASGKANGETKSVNSRGIPSGSDLVGGIAASSVPGLSPSSSVCSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPTNVTTVPSMPGMPVGIGIGPTFAGPQPIIYNPQVAQMPSQGYFHPNAPQYGQLLGHPRQSLYMPSYLPEMQYKGRDY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain