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Report for Sequence Feature Glyma13g42221

Feature Type:gene_model
Chromosome:Gm13
Start:42268854
stop:42270357
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02010AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825 SoyBaseE_val: 2.00E-74ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7IS13UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IS13_MEDTR SoyBaseE_val: 2.00E-99ISS
UniRef100_I1KI78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI78_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g42221 not represented in the dataset

Glyma13g42221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g346800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g42221.1   sequence type=CDS   gene model=Glyma13g42221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGATCCATAGCGAAGCCAATAAAATATGTCCTTTGCACTGCACTTAGTTCTTGTGCAAAATCTCTGAATTGGCATTTGGGTATACAGATCCATGCTTACATGATTCGATCTGGACATGAAGATAATTTGTTCCTTAGCAGTGCACTTGTTGATTTCTATGCGAAATGTTTTGCTATTGTCGATGCAAGGAAGTGTAGTGTCTGTGTGGGGCAAAATGGTGCCCTTGAACATTGTTCAACTCTTCATGCTTCTGTCATCAAACGGGGATATGATACTAACAATTTTGTAGTCAGCTCATTAATTGATTGTTATGCAAATTCGGGACAAATTGATGACGCTGCATTATTATTTGATGAAACTAATGAGAAGGATATTGTTGTATACAATTCTATGATCTCTGGATATTCTAAAAATCTGTACAGTGAAGATACATTGAAACTATTTGTAGAAATGAGGGGAAAAAATTTGAATCCTACCGATCATACTTTATGTACCATTTTAAATGCTTGCAACAGCCTTGCAGTGCTCTTTCAAGGAAGACAAGTGCACTCTCTTGTTATTAAAATGGGTTCAGAAGGGAATGTGTTTGTGGCCAGTGCTTTGAATGATATGTATTCCAAGGGTGGCAATAGTGACGAGGCTCAATGTGTGTTAGATCAGACTTCTAAGAAGAATAATGTGTTGTATCATGGGTTATGCTCAATGCTAGAGTTAATTCCTGATCATATCTGCTTTACTGCTGTCTTAACAGCTTGTAATCATGCAGGATTTCTTGACAAAGGGGTGGAGTACATCAACAAAATGACAACAAATTATGGCTTGTCTCCTGATATAGATCAATATGCTTGCTTGCTTGATCTTTATGCTGGAAACGGAAATTTAAGTAAGGCTAGGGATTTGATGGAAGAAATGCCTTATGATCCAAATTATGTAATCTGGAGTTCTTTCTTTAGTTCTTGTAAGATTTATGGAGATGTAGAACTTGGGAGGGAGGCTGCTGATCAACTTATTAAGATGAAACCAGGTAACGCAGCACCACATTTGACACTAGCACATATCTATGCAAGAAAAGGTTTATGGAATGAAGTTGCTGAAGTCAGAAGGCTTATGCAACAAAGGAGAATAAGAAAACCTGCAGGTTGGAGTTGGGTAGAGGTGGATAAGCAGATTCATGTATTTGCAGTTGATGATGTAACTCATCAACAATCAAATGAAATCTACAGAGAGTTAGAATATATTTACTTGGGAATCATAGAAGCGTCATCTTATGTAGTAGAGGATAGCAATATTCTAGCATAG

>Glyma13g42221.1   sequence type=predicted peptide   gene model=Glyma13g42221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGSIAKPIKYVLCTALSSCAKSLNWHLGIQIHAYMIRSGHEDNLFLSSALVDFYAKCFAIVDARKCSVCVGQNGALEHCSTLHASVIKRGYDTNNFVVSSLIDCYANSGQIDDAALLFDETNEKDIVVYNSMISGYSKNLYSEDTLKLFVEMRGKNLNPTDHTLCTILNACNSLAVLFQGRQVHSLVIKMGSEGNVFVASALNDMYSKGGNSDEAQCVLDQTSKKNNVLYHGLCSMLELIPDHICFTAVLTACNHAGFLDKGVEYINKMTTNYGLSPDIDQYACLLDLYAGNGNLSKARDLMEEMPYDPNYVIWSSFFSSCKIYGDVELGREAADQLIKMKPGNAAPHLTLAHIYARKGLWNEVAEVRRLMQQRRIRKPAGWSWVEVDKQIHVFAVDDVTHQQSNEIYRELEYIYLGIIEASSYVVEDSNILA*







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