Glyma13g42180 - SoyBase

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Report for Sequence Feature Glyma13g42180

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42256028
stop:	42261395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30710	AT	Annotation by Michelle Graham. TAIR10: Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr2:13086147-13088991 REVERSE LENGTH=440	SoyBase	E_val: 0	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
KOG1092	KOG	Ypt/Rab-specific GTPase-activating protein GYP1	JGI		ISS
PTHR22957	Panther	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	JGI		ISS
PTHR22957:SF26	Panther	TBC1 DOMAIN FAMILY MEMBER 22A	JGI		ISS
PF00566	PFAM	TBC domain	JGI		ISS
UniRef100_G7IS12	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TBC1 domain family member 22A n=1 Tax=Medicago truncatula RepID=G7IS12_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M585	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M585_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42180

Paralog	Evidence	Comments
Glyma15g03200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g346500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g42180

Limit To All Plant Sequences

>Glyma13g42180.1   sequence type=CDS   gene model=Glyma13g42180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACGACCACAACAACAACGCCGAACACAACAAAGACACTACCGTTGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTAAGCCAGAGGGTTGAATCTCCAGATTACACAAGCTTATCCTCACCAACTTATATAAGGAGCTCCTCATACAGTGAAACTGGCACAAGTGACCAGACATCTGAGACAGTAGAGGAGGAAGTTCACAGTACAAGTAAACCATTTGGTATTCCCAATGAGAATAAGTTGAAAATATCAGCATCCAATGTAGAGAGCTCATCTGAAGAACTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTGCCTGAAGTTTCATTCTTTCAACAACAGCAAGTTCAGAAATCATTGGAGCGTATTCTGTACACATGGGCAATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTGGAAGGGGGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAGGCTGACTGCTATTGGTGCTTGTCAAAGTTGCTTGACAGTATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAACCATATGGAGGAGCAAGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGTGGTCTGACAATCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACTGACCAGGAGCTCGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGTCATTTAGCTAACTGA

Predicted protein sequences of Glyma13g42180

Limit To All Plant Sequences

>Glyma13g42180.1   sequence type=predicted peptide   gene model=Glyma13g42180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNDHNNNAEHNKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVESPDYTSLSSPTYIRSSSYSETGTSDQTSETVEEEVHSTSKPFGIPNENKLKISASNVESSSEELRKSSMGARATDSARVMKFTKVLSETMVKLEKLREFSWRGVPDYMRPTVWRLLLGYAPPNSDRREGVLKRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDEISNVEADCYWCLSKLLDSMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSNHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDNLQKLDFQELVMFLQHLPTKNWTDQELEMVLSRAFMWHSMFNNSPSHLAN*

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