Glyma13g42140 - SoyBase

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Report for Sequence Feature Glyma13g42140

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42226783
stop:	42228902
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24070	AT	Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein \| chr5:8134301-8135991 REVERSE LENGTH=340	SoyBase	E_val: 1.00E-154	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_D7M2G6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M2G6_ARALL	SoyBase	E_val: 2.00E-152	ISS
UniRef100_UPI00018C706A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C706A related cluster n=1 Tax=unknown RepID=UPI00018C706A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42140

Paralog	Evidence	Comments
Glyma15g03250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g346100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g42140

Limit To All Plant Sequences

>Glyma13g42140.1   sequence type=CDS   gene model=Glyma13g42140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGTTATGTGTGTGGGTTTTCCACTGGTAGCTCTCGTAGTGGTGAGCATGTGTTATGGATTGGCAGATGCAGAGGTGAAAACACCAAATTTGCGGTGGCATTATTATAAGGTGACGAATAGATGTCACGACGCAGAGGAGTATGTCCGGCACCAAGTGAACCTGTTTTGGAAGAATGACAGAAGCATTACAGCAAAGCTTCTCCGCTTGGTTTATGCTGACTGTTTTGTCACTGGATGTGATGCATCAATTCTGCTTGACGAAGGAGCAAATCCAGAGAAAAAAGCAGCACAAAACCGGGGGCTTGGAGGATTTGCGGTCATTGACAAGATAAAAGCTGTTCTGGAATCACGATGCCCTGGAACTGTGTCTTGTGCTGATATACTCCACCTCGCCACCAGGGATGCTGTTAAACTGGCAGGTGGAGCAGGTTACCCAGTTTTAACAGGTAGAAAGGATGGCATGAAATCAGATGCTGCATCAGTAGACCTGCCATCACCATCCGTCTCGCTGCAGAAAGTCCTGGAATATTTCAAATCCAGGAACTTGAATGAACTAGACATGACCACACTTTTAGGAGCACACACAATGGGCAGAACACATTGTAGCTTTATTGTTGATCGGCTCTACAACTACAATGGTTCCGGAAAACCCGACCCAAGCATGAGTGTTACTTCACTAGAGTCGTTGAGAAAACTTTGCCCGCCAAGAAAGAAGGGACAAGCAGACCCTCTGGTACACCTAAACCCAGAATCAGGGTCAAGTTACAACTTCACAGAATCATACTACAGAAGGGTCCTATCCCACGAAGCTGTCCTTGGAGTTGATCAACAATTACTATATAGTGATGACACTAAACAGATCTCCGAGGAGTTCGCTGTTGGATTTGAAGATTTTCGGAAATCTTTTGCTACATCAATGTACAAGATGGGGAATTACAGGGTTTTAACAGGCAACCAAGGAGAGATACGCCGATATTGCCGATACACAAATAAGGGCAACCCAAATAAGTAG

Predicted protein sequences of Glyma13g42140

Limit To All Plant Sequences

>Glyma13g42140.1   sequence type=predicted peptide   gene model=Glyma13g42140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRVMCVGFPLVALVVVSMCYGLADAEVKTPNLRWHYYKVTNRCHDAEEYVRHQVNLFWKNDRSITAKLLRLVYADCFVTGCDASILLDEGANPEKKAAQNRGLGGFAVIDKIKAVLESRCPGTVSCADILHLATRDAVKLAGGAGYPVLTGRKDGMKSDAASVDLPSPSVSLQKVLEYFKSRNLNELDMTTLLGAHTMGRTHCSFIVDRLYNYNGSGKPDPSMSVTSLESLRKLCPPRKKGQADPLVHLNPESGSSYNFTESYYRRVLSHEAVLGVDQQLLYSDDTKQISEEFAVGFEDFRKSFATSMYKMGNYRVLTGNQGEIRRYCRYTNKGNPNK*

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