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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g42130

Feature Type:gene_model
Chromosome:Gm13
Start:42215552
stop:42221847
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g42130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07565AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=258 SoyBaseE_val: 9.00E-98ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR14000Panther ZUOTIN RELATED FACTOR 2-RELATED JGI ISS
PTHR14000:SF1Panther gb def: possible putative cell division related protein. [trypanosoma brucei] JGI ISS
PF12579PFAM Protein of unknown function (DUF3755) JGI ISS
UniRef100_B4FB11UniRef Annotation by Michelle Graham. Most informative UniRef hit: Myb-like DNA-binding domain containing protein n=1 Tax=Zea mays RepID=B4FB11_MAIZE SoyBaseE_val: 1.00E-72ISS
UniRef100_I1M581UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M581_SOYBN SoyBaseE_val: 2.00E-170ISS

Expression Patterns of Glyma13g42130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g42130 not represented in the dataset
Glyma13g42130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42130
ParalogEvidenceComments
Glyma15g03260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g346000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g42130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g42130
>Glyma13g42130.1   sequence type=CDS   gene model=Glyma13g42130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCGAACCCATCTGGCAACCATCAAGAGCACACGCACGTGGTGTCGTCTTCTGCTCCAGAGACTTCAGGTGCGGCTCTCGCGATGAAGCACAATCCTGGCATATCCCTCGATTGGACCGCAGAAGAACAAGCCATTCTCGAAGATGGACTCTCCAAGTATGCCTCAGAATCCAACATAGTACGCTATGCAAAGATAGCCCTACAGCTACAGCAAAAAACGGTTCGTGATGTAGCACTGCGAGTCAGGTGGATGAATAAGAAAGAAAATAGCAAGAGAAGGAAGGATGATCATAATTTAACTCGGAAAAGTAAAGATAAAAAGGAAAGGGTTTCTGATCCCGCAGTAAAGTCATCTAACTTTGTTGCTCGGTCCAATGTCTCCCCATATGCTCCACCAATGATTGCAATGGACAATGATGATGGCATCTCTTATACAGCAATTGGAGGTCCCACCGGTGACCTATTAGAGCAAAATGCACAGGCCTTGAATCAAATCTCCACAAATCTTTCTGCTTTCCAGGTACAGGAGAACATCAATCTTTTCTGCCAAACTAGAGATAACATCCTTAAAATTATGAACGAGTTGAATGACTCGCCAGAGGTGATGAAGCAAATGCCACCTCTTCCTGTGAAGGTGAATGAAGAGCTAGCCAATTCCATACTCCCAAGAACAAATCTTCCACCACAATCATGA
Predicted protein sequences of Glyma13g42130
>Glyma13g42130.1   sequence type=predicted peptide   gene model=Glyma13g42130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMANPSGNHQEHTHVVSSSAPETSGAALAMKHNPGISLDWTAEEQAILEDGLSKYASESNIVRYAKIALQLQQKTVRDVALRVRWMNKKENSKRRKDDHNLTRKSKDKKERVSDPAVKSSNFVARSNVSPYAPPMIAMDNDDGISYTAIGGPTGDLLEQNAQALNQISTNLSAFQVQENINLFCQTRDNILKIMNELNDSPEVMKQMPPLPVKVNEELANSILPRTNLPPQS*






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