Glyma13g42070 - SoyBase

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Report for Sequence Feature Glyma13g42070

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42161060
stop:	42164805
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g42070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06130	AT	Annotation by Michelle Graham. TAIR10: glyoxalase 2-4 \| chr1:1858034-1860640 REVERSE LENGTH=330	SoyBase	E_val: 0	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004416	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroxyacylglutathione hydrolase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0813	KOG	Glyoxylase	JGI		ISS
PTHR11935	Panther	BETA LACTAMASE DOMAIN	JGI		ISS
PTHR11935:SF7	Panther	GLYOXYLASE-RELATED	JGI		ISS
PF00753	PFAM	Metallo-beta-lactamase superfamily	JGI		ISS
UniRef100_C6TKG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TKG9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LQC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyacylglutathione hydrolase 5 n=2 Tax=Glycine max RepID=I1LQC6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g42070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g42070

Paralog	Evidence	Comments
Glyma15g03320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g42070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g345400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g42070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g42070

Limit To All Plant Sequences

>Glyma13g42070.2   sequence type=transcript   gene model=Glyma13g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCCTCTTCTGCTATGCCCAATTTTATTCTTTGATTCCGTCTATTGTCTATCTCTTTCCCTTGTGATTATTTATTGCAATATAATTCTGAAATTAGTTGCTTCTTGGTGAAAAGTGGGTTGTGCGTGTGGCCAGATGTGAGACAACTTTGCTTTAGAAAAGGCATGCTATATGGATTTATGCGGTTGTTTTCTACACCGTTGAAAACGCTCCGTGGAGCTAGCCGCTCGCTGAGAGTGACTCAATTTTGCAGTGTTGCCAATATGTCTTCCTCATTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCTTATCTGTTACATGATGTGGACACGGGTACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTATCATAGATGCCTTGAGCAGGAAAAATCGAAATTTGACATACATACTCAACACTCACCATCATCATGATCACACGGGTGGAAATGTAGAATTGAAAGCAAGATATGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGGAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACACTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATATACTGTGGACACGAGTATACATTGAATAATATAAAGTTTGCATTGTCTATCGAACCTGAAAACGAGGAGCTTCAATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAAGATTGCAGCCACAGCAAATGATGCAGAAGCCCTTGGTGTCATCCGGCAAGCAAAGGATAATTTTTAGATTATTTACTTATAATATTTTGAAAGTCTGAAGAAACTTGTTCTATGTAGGGTAGGGTATGAATCCATCCGTGGCATAAAATGTGCTTGATGCTATGTTCTCAATATGATTTCAGAAATTTTGTTTCCATTTGGGAGGGTCTGTATGTACTTGGTGCCTTAGAAAGTTGTGGTGCGATTTAGAGGTGTACAATACATACATGACACTCACTCAGTTGAGGATATGTGGCGGGAAGAAGGCTAGCTAGCAGTTTAAAGTAAACTCCTTGGCCAATGGCGACCCACCCCCACTTCCCTCAAAGGAACAAGAGCCATATATGGGTCTGGACTCTGGACTGAGTTTTGCTACCAAGAGCGCGTATAAGTGGCTTCTTGAGGATCTATCTGCAAGTCTCAACATACAAAAAAATTAGTAATATAAATTATTATTATATTGACTTACCAATTATATATATATATATATATAT

Coding sequences of Glyma13g42070

Limit To All Plant Sequences

>Glyma13g42070.1   sequence type=CDS   gene model=Glyma13g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCATATGTTCTCTAAGGCTTCTTCTGCTATGGCCACTTTTCCTTGTTCCAGGGTGAAAAGTGGGTTGTGCGTGTGGCCAGATGTGAGACAACTTTGCTTTAGAAAAGGCATGCTATATGGATTTATGCGGTTGTTTTCTACACCGTTGAAAACGCTCCGTGGAGCTAGCCGCTCGCTGAGAGTGACTCAATTTTGCAGTGTTGCCAATATGTCTTCCTCATTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCTTATCTGTTACATGATGTGGACACGGGTACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTATCATAGATGCCTTGAGCAGGAAAAATCGAAATTTGACATACATACTCAACACTCACCATCATCATGATCACACGGGTGGAAATGTAGAATTGAAAGCAAGATATGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGGAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACACTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATATACTGTGGACACGAGTATACATTGAATAATATAAAGTTTGCATTGTCTATCGAACCTGAAAACGAGGAGCTTCAATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAAGATTGCAGCCACAGCAAATGATGCAGAAGCCCTTGGTGTCATCCGGCAAGCAAAGGATAATTTTTAG

>Glyma13g42070.2   sequence type=CDS   gene model=Glyma13g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATATGGATTTATGCGGTTGTTTTCTACACCGTTGAAAACGCTCCGTGGAGCTAGCCGCTCGCTGAGAGTGACTCAATTTTGCAGTGTTGCCAATATGTCTTCCTCATTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCTTATCTGTTACATGATGTGGACACGGGTACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTATCATAGATGCCTTGAGCAGGAAAAATCGAAATTTGACATACATACTCAACACTCACCATCATCATGATCACACGGGTGGAAATGTAGAATTGAAAGCAAGATATGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGGAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACACTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATATACTGTGGACACGAGTATACATTGAATAATATAAAGTTTGCATTGTCTATCGAACCTGAAAACGAGGAGCTTCAATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTACCCACGATTCCCACCACACTGAAGGTGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAAGATTGCAGCCACAGCAAATGATGCAGAAGCCCTTGGTGTCATCCGGCAAGCAAAGGATAATTTTTAG

Predicted protein sequences of Glyma13g42070

Limit To All Plant Sequences

>Glyma13g42070.1   sequence type=predicted peptide   gene model=Glyma13g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHMFSKASSAMATFPCSRVKSGLCVWPDVRQLCFRKGMLYGFMRLFSTPLKTLRGASRSLRVTQFCSVANMSSSLQIELVPCLKDNYAYLLHDVDTGTVGVVDPSEAVPIIDALSRKNRNLTYILNTHHHHDHTGGNVELKARYGAKVIGSGTDKERIPGIDIHLNDGDKWMFAGHEVRVMDTPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPQQMLSSLKKIMSLSDDTNIYCGHEYTLNNIKFALSIEPENEELQSYAAQVAYLRSKGLPTIPTTLKVEKACNPFLRTSSAAIRQSLKIAATANDAEALGVIRQAKDNF*

>Glyma13g42070.2   sequence type=predicted peptide   gene model=Glyma13g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYGFMRLFSTPLKTLRGASRSLRVTQFCSVANMSSSLQIELVPCLKDNYAYLLHDVDTGTVGVVDPSEAVPIIDALSRKNRNLTYILNTHHHHDHTGGNVELKARYGAKVIGSGTDKERIPGIDIHLNDGDKWMFAGHEVRVMDTPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPQQMLSSLKKIMSLSDDTNIYCGHEYTLNNIKFALSIEPENEELQSYAAQVAYLRSKGLPTIPTTLKVEKACNPFLRTSSAAIRQSLKIAATANDAEALGVIRQAKDNF*

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