SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g41930

Feature Type:gene_model
Chromosome:Gm13
Start:42086167
stop:42087235
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g41930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07490AT Annotation by Michelle Graham. TAIR10: ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153 SoyBaseE_val: 4.00E-74ISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF141Panther CALCIUM-BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_I1M558UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M558_SOYBN SoyBaseE_val: 2.00E-117ISS
UniRef100_Q9SCA1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein n=1 Tax=Lotus japonicus RepID=Q9SCA1_LOTJA SoyBaseE_val: 6.00E-80ISS

Expression Patterns of Glyma13g41930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g41930
ParalogEvidenceComments
Glyma15g03460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g41930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g344200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g41930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g41930
>Glyma13g41930.1   sequence type=CDS   gene model=Glyma13g41930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGGCAAGAAGTTGTATTTTGGCATCCCCGTGGCTTCAAGAAGAGAATCTCAATGGAGGCCCAGGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGGAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAACCTGGGCATCTTCATCTCTGACAAGGACCTGAGCCAAATGATCCAGAGGATCGACGTCAACGGCGACGGTTGCGTGGACATGGACGAGTTTGGGGAGCTGTATCAGACCATAATGGACGAGCGCGACAATGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCTTGTCCTCCCTCGGCTTGAAGCAAGGAAGAACCGTCCAAGACTGCAAGGCCATGATCTCCAAGGTCGATGTTGATGGAGATGGCATGGTCGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGATTCACTGCTCTCACTTAA
Predicted protein sequences of Glyma13g41930
>Glyma13g41930.1   sequence type=predicted peptide   gene model=Glyma13g41930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRQEVVFWHPRGFKKRISMEAQELKRVFQMFDRNGDGRITKKELNDSLENLGIFISDKDLSQMIQRIDVNGDGCVDMDEFGELYQTIMDERDNEEDMREAFNVFDQNADGFITVDELRTVLSSLGLKQGRTVQDCKAMISKVDVDGDGMVDYKEFKQMMKGGGFTALT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo