Glyma13g41830 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g41830

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42026944
stop:	42034729
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g41830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31510	AT	Annotation by Michelle Graham. TAIR10: IBR domain-containing protein \| chr2:13416991-13421170 REVERSE LENGTH=562	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1815	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR11685	Panther	ARIADNE RING ZINC FINGER	JGI		ISS
PTHR11685:SF10	Panther	ARIADNE-2-RELATED	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
UniRef100_B9RM26	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RM26_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M544	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M544_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g41830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g41830

Paralog	Evidence	Comments
Glyma15g03590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g41830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g343300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g41830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g41830

Limit To All Plant Sequences

>Glyma13g41830.1   sequence type=CDS   gene model=Glyma13g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCGAGGACGATATGCACGACGCCAACGATGTGGAGTCCCTTGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCATGGATTACTACAGTGACTACGACGACGAAGCTGACGATTACTTCGACGATGCTGACGATTCTGACCGGGTTGAGTCTCGCCGCCCTGAGCAAAACTTTACAATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAGGATGACATAGCTAGAGTAGCGGCAGTTCTTTCCATACCGCGGGTTTCTGCGAGCATCCTACTTCGTCACTACAACTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGGAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATTCTAATACTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGTGCACGGGTTGAATCTGCTGCTTGTGGCCACCCTTACTGCTATTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGTGCTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTAACCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACCGTTACCTTCTCAGATCTTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTTGACTGTGGCACTGTTTCAAAGTGGATTTTGAAAAATAGTGCTGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAACCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCTCCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGATTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGATACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACAGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATTCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTGAATGCTGATGGCCCATCTAAAGAATTCAATGACTTTCGCACTAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTGGCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTATTCGAACTATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCACTGTACCTATGCCAATGTTAAGTCTGCCACCACATGTCAAATGTGCAATCAACAGCGTCGATGA

Predicted protein sequences of Glyma13g41830

Limit To All Plant Sequences

>Glyma13g41830.1   sequence type=predicted peptide   gene model=Glyma13g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDEADDYFDDADDSDRVESRRPEQNFTILRELDIRQRQEDDIARVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVFQNSNTRELTCGICFEMYPRARVESAACGHPYCYSCWAGYIGTSINDGPGCLVLRCPDPSCGAAVGQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTISSRMTDDNHWSCEHCTYANVKSATTCQMCNQQRR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain