Glyma13g41800 - SoyBase

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Report for Sequence Feature Glyma13g41800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42007537
stop:	42010746
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g41800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24550	AT	Annotation by Michelle Graham. TAIR10: beta glucosidase 32 \| chr5:8392059-8395302 REVERSE LENGTH=534	SoyBase	E_val: 3.00E-146	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0626	KOG	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins	JGI		ISS
PTHR10353	Panther	GLYCOSIDE HYDROLASES	JGI		ISS
PF00232	PFAM	Glycosyl hydrolase family 1	JGI		ISS
UniRef100_A9Z0X2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosylhydrolase 1 n=1 Tax=Leucaena leucocephala RepID=A9Z0X2_LEULE	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AF40	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AF40 related cluster n=1 Tax=unknown RepID=UPI000233AF40	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g41800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g41800

Paralog	Evidence	Comments
Glyma15g03610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g41800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g343000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g41800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g41800

Limit To All Plant Sequences

>Glyma13g41800.1   sequence type=CDS   gene model=Glyma13g41800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGACGTTCAGATCATGAAAGGTATGAATTTGGATGCATATAGGTTCTCTATCTCTTGGTCAAGAATCCTCCCAAATGGAAAACTTAGTGGAGGTATAAATCGAGAAGGAATAAATTATTACAACAATCTCATCCATGAATTGCAGACTAAAGGTTTAAAACCTTTTGTGACCCTTTTTCATTGGGATCTCCCCCAAGCTTTAGAAAATGAGTATAAAGGCTTCTTATCCGAGTCCATTATAGATGATTTTGGAGACTATGCGAAATTTTGTTTCGAAGAATTTGGAGATAGGGTGAAGCATTGGATTACTTTTAATGAACCGCATATTTTTAGCTCGCATGGCTATGCATATGGGACGAAGGCACCGGGTCGTAAGTCTCAGGGGCTCCGTCCAGACAGTGGAGGGACAGAGCCTTATCGTGTTTCACATAACATACTTCTTGCTCATGCAAAAGCTGTCCAATTGTATAGGAATTCCTATAAGGAATCTCAAAATGGAGAGATAGGCATAACCCTCGATTCTAGATGGTTCGTGCCCTATTCAGATGCTTCTTCAGACATAGAAGCTACCGAACGAGCACTTGACTTCGAGATTGGATGGTTCATGGAACCATTGACATCAGGAAAGTATCCAGAAAGCATGCAGCTTTATGTTGGTAGACGATTGCCAGAGTTCTCTAAAGAGGAAGCCGAGCTTGTCCGTGGATCATTTGATTTTATTGGACTAAACTATTACACCACCAATACCGCGCGCGTTGCCACTGGCTATACGGACTCAGTGCATCATCATCCAGATCTATCTACTGATCCTAATGTCGAACTTGGATTAACTCGTCTCAACGGGTCGTCTCCTATAGGTCCAGTGCCAGGTTTAGGATGGTTATGTGTTTATCCCAAAGGAATTAGAGAATTGCTGCTCCGTATCAAAAACCTGTACAACAATCCCTTGATTTATATAACTGAAAATGGAATAAATGAATTAGATGATCCAACACTATCACCTGAGGAATCTCTTATGGATTTTTACAGAATTGATTATCATTATCGTCATCTATTGAATGTTGATTATGCAATAAGGGATGGCGTGAGAGTAAAGGGATATTTTGTCTGGTCACTGCTGGACTGCTTTGAATGGAGTAATGGTTATATACCTCGATTTGGATTGATTTTTGTGGATCACAAAAATAATTTGAACCGATCTCCAAAACTCTCTGCAAAATGGTTCCGGAAATTTTTACAAAATCGACTGCTTTGA

Predicted protein sequences of Glyma13g41800

Limit To All Plant Sequences

>Glyma13g41800.1   sequence type=predicted peptide   gene model=Glyma13g41800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EDVQIMKGMNLDAYRFSISWSRILPNGKLSGGINREGINYYNNLIHELQTKGLKPFVTLFHWDLPQALENEYKGFLSESIIDDFGDYAKFCFEEFGDRVKHWITFNEPHIFSSHGYAYGTKAPGRKSQGLRPDSGGTEPYRVSHNILLAHAKAVQLYRNSYKESQNGEIGITLDSRWFVPYSDASSDIEATERALDFEIGWFMEPLTSGKYPESMQLYVGRRLPEFSKEEAELVRGSFDFIGLNYYTTNTARVATGYTDSVHHHPDLSTDPNVELGLTRLNGSSPIGPVPGLGWLCVYPKGIRELLLRIKNLYNNPLIYITENGINELDDPTLSPEESLMDFYRIDYHYRHLLNVDYAIRDGVRVKGYFVWSLLDCFEWSNGYIPRFGLIFVDHKNNLNRSPKLSAKWFRKFLQNRLL*

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