SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20780 | AT | Annotation by Michelle Graham. TAIR10: topoisomerase 6 subunit B | chr3:7264025-7268498 REVERSE LENGTH=670 | SoyBase | E_val: 0 | ISS |
| GO:0003002 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regionalization | SoyBase | N/A | ISS |
| GO:0006265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA topological change | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0009741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus | SoyBase | N/A | ISS |
| GO:0010026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome differentiation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0033043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0009330 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA topoisomerase complex (ATP-hydrolyzing) | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003918 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| PF09239 | PFAM | Topoisomerase VI B subunit, transducer | JGI | ISS | |
| UniRef100_G7IHQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA topoisomerase 6 subunit B n=1 Tax=Medicago truncatula RepID=G7IHQ9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M541 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M541_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g41790 not represented in the dataset |
Glyma13g41790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g342900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g41790.1 sequence type=CDS gene model=Glyma13g41790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGGAGATGGTAGCAGTGAAAGCCCAATCGAAACTAAGAAAGCCAAGTCAAAAACCCCTCGAAAACCTAAAGAAACCATTCTGAAGCAAAAATCCCCTGCCGAATTCTTCGCAGAAAATAAGAACATTGCAGGATTTGATAACCCTGGAAAATCTCTTTATACTACTGTTAGAGAGCTTGTGGAGAACTCACTTGACTCGGCGGAGTCCATATCGGAGCTTCCGGTGGTTGAAATTACCATTGAGGAGATAGGGAAAAGCAAATTTAATTCCATGATTGGTCTTGTTGATCGGGAACGTGTTGATGCGGCTTTGTATGATGATTATGAAACTGAGAAGGCTCGTGAGAAACGATTAGCAAAAGAGGCCCGTGCTCAAGAGATGCAAGCAAAGAATGCTGCCCTCGGAAAGAAAGTGAAAGATACTCCAGCTTCAAAGGCTATCAAGGGTCGAGGTGAGGCTTCCTTTTACAGAGTTACATGCAAGGATAATGGAAAAGGAATGCCACATGATGACATCCCAAATATGTTTGGCCGAGTTCTATCTGGGACAAAATATGGCTTGAAACAGACACGTGGAAAGTTTGGTCTTGGTGCAAAGATGGCATTAATATGGTCTAAAATGAGTACTGGGCTTCCTATTGAGATCACTTCATCAATGAAGAACCAAAATTATGTTTCATTTTGCAGGCTGGATATTGACATTCATAAGAATATTCCTCATGTACATTTACATGAAAAACGGGAGAACAAGGAACATTGGCGTGGAGCTGAAATTCAAGTTGTCATAGAGGGGAACTGGACAACTTACCGGTCAAAAATATTGCATTACATGCGACAAATGGCTGTTATCACCCCTTATGCTCAGTTTCTATTTAAATTTGTGTCAGATGCACCTGACAAGAATGTCTCTATAAGATTTGCTCGCAGAACAGATGTAATGCCACCCATTCCTATGGAGACAAAGCATCATCCATCATCGGTTGATTTGCTGCTAATTAAACGACTTATTGCTGAAACTTCGAAGCAGAATCTTTTGCAGTTTCTTCAGCATGAATTTGTAAATATCAGTAAATCTTATGCTGAAAGATTGATAGGAGAAATGGGTCCAGACTTCGGCTCGAAAATGACTGTGAAGTCTCTAACTTCACAGCAATTAGTACGGATTCATCAATTGCTTCGTCAAGCCAAGTTTGATGATCCTAGTGGTCATTGTCTTAGCCCTGCTGGTGAATACAATCTTCGGTTAGGAATTATAAAAGAGCTGCACCCGGACATGGTTGCAACTTATTCAGGCAGTGCTCAAGTTTTTGAAGGTCACCCATTCATTGTGGAAGCTGGAGTCAGTGTAGGTGGAAAAAATGTCAAACAAGGTCTGAATATATTTCGATTTGCCAATAGAATTCCACTACTTTTTGAGCAAGGTGCTGATGTTGTCACCAGAACTGCACATAAAAGAATCAACTGGAGTAGTTACAAAATCAACCAGATGCAAGATAAGATTGGTGTCTTTGTAAGCATTGTGAGCACAAAAATTCCATTCAAAGGAACTGGGAAAGAATACATTGGAGATGACATAACTGAGATTGCTTCTGCTGTCAAGTATGCTATTCAGCAGTGTTGTGTCCAATTAAAATCCAAGATTGTGAAAAAGATGCATGCACGTGAGCAGCAGGAGAGGAAACGAAATCTAAGCAGGTATATTCCTGATGCTTCTGGTGCAGTATACAATGTTTTGAAAGAAATGACACAGTTACATGCATCAAAGAAGATTCGTTATGGGGATGATGATGCTGAACTACTGAGTAAAGTCTCTGAGAATTTGATTACTAAAGAAACACTGTGTGAAAAGCTTTCTAAACATGTTGAACAGGTTGACTATGAAATGGCATTGGAGTATGCCACGCAGAGTGGAGTAAGCGAAGAACCCAGAGAAACAATATACATACAATCATTGGAAGCTGAAAATAAGATGATTGACCTACAGACTCCATTTATTGTTTTCAGAGTCTTTCAGTAG
>Glyma13g41790.1 sequence type=predicted peptide gene model=Glyma13g41790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGDGSSESPIETKKAKSKTPRKPKETILKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDAALYDDYETEKAREKRLAKEARAQEMQAKNAALGKKVKDTPASKAIKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEITSSMKNQNYVSFCRLDIDIHKNIPHVHLHEKRENKEHWRGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDAPDKNVSIRFARRTDVMPPIPMETKHHPSSVDLLLIKRLIAETSKQNLLQFLQHEFVNISKSYAERLIGEMGPDFGSKMTVKSLTSQQLVRIHQLLRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKNVKQGLNIFRFANRIPLLFEQGADVVTRTAHKRINWSSYKINQMQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKYAIQQCCVQLKSKIVKKMHAREQQERKRNLSRYIPDASGAVYNVLKEMTQLHASKKIRYGDDDAELLSKVSENLITKETLCEKLSKHVEQVDYEMALEYATQSGVSEEPRETIYIQSLEAENKMIDLQTPFIVFRVFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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