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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20790 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr3:7268802-7271099 FORWARD LENGTH=355 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2742 | KOG | Predicted oxidoreductase | JGI | ISS | |
| PTHR22604 | Panther | OXIDOREDUCTASES | JGI | ISS | |
| PTHR22604:SF47 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01408 | PFAM | Oxidoreductase family, NAD-binding Rossmann fold | JGI | ISS | |
| PF02894 | PFAM | Oxidoreductase family, C-terminal alpha/beta domain | JGI | ISS | |
| UniRef100_G7IHQ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase, putative n=1 Tax=Medicago truncatula RepID=G7IHQ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M540 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M540_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g41780 not represented in the dataset |
Glyma13g41780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g03625 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g342800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g41780.2 sequence type=transcript gene model=Glyma13g41780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCTGAAACCGTGTATCACATGAATCCGAATTGGTAGATAGCTACATGACTTACGTGGTAACATTTGCATTGTGTTGTAGTTATGGCGACGAAGCAGCTTCCGCAGATCGCCATTCTGGGAGCTGGTATCTTTGTGAAGACTCAGTACCTTCCGAGACTCTCCGAGATCTCTCATCTTTTCATTCTGAAATCCATTTGGAGCCGCACTCAGGAATCAGCTACAGCTGCCGTAGACATAGCTCGTAAGCATTTTCCCCAAGTAGAGACTAAGTGGGGAGATAACGGTTTTGATGACATCATTCACGATGGATCAATCGATGCTGTTGCCGTGGTCTTGGCTGGACAAAATCAGGTTGACATCTCACTCAGGTTGCTAAAGGCTGGTAAACATGTCCTTCAAGAAAAACCTGCAGCATCCTGTACAAGTGAATTGGAAGCTGCATTGTCTAGCTACAAATCTATTTCTTCTGATGCTCCCGGTCAATTAATTTGGTCTGTGGCTGAAAATTATCGATTTGAGCCTGGCTTAGTAGAGTGCAAGAAACTAATTGCTGGCATTGGGAAAATGATGAGTGTCCAAGTCATTATTGAAGGATCAATGAACAGTTCAAACCCCTATTTTTCAAGCTCTTGGAGGCGCAATTTCACTGGAGGTTTCATTCTTGATATGGGTGTGCATTTCATTGCAGGGTTAAGAATGCTTGTTGGGTGTGAGATTGTTTCAGTTTCAGCTATGACATCTCATGTGGATTTGACCTTACCTCCCCCAGATAATATATCATCTGTCTTTCATTTGGAGAATGGATGTTCAGGAGTGTTTGTAATGGTTGTCTCCTCCAGATCCCCCAAGACCTTGTGGCGAGTTGTTGGCTTGAATGGAACCCTGCAAGTTGAGCGTGGATTCCAAGGACAACATGGTTACCTGGTTTCATTTTATGGTACCGATGGACAAAACAAAAGCTCTTTTTTCCCATTCAGTGGAGTAACTGAAGAATTAAAAGCTTTTATTAATGATGTATCTGAAATCACCCTCAAGAAGCGGAATCAGTTTGTGACTGAGCCTCGCCTCTCTTATGTCGAAGGTGCAAGAGATGTTGCTGTGTTAGAGGCAATGCTTGAATCTGGAGCTAGGCAAGGTGAGTTAGTTCGTCTGAAAAAGTTTTGAGGCAATAATGGAATTGGTCACCTAGTTCAATGTCTGCGGATATTTACTCTGTATTGTTCTTGAACATTGAGGTAAGCAAGGCAGTTAAGTATTAGATGAATAAGGTGGTGTTTAAATAATTGCTCTGATCAATGTCATTGGATGAAGTTGTAGGATTTGCATAATATATCATGCATATATTAATACTGTGAGAAACTTGGTGCTCTCATATTTCGTTTTGTACATATGCTCTCGGGCACTTACGAATTTCTTTAATTTTGGTGCACTTCGTGGACTGGATTTTGGATTGTCTTTTTACCCTCTATTGTTAGAAGAGAAGCTTTGTGACA
>Glyma13g41780.1 sequence type=CDS gene model=Glyma13g41780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGAAGCAGCTTCCGCAGATCGCCATTCTGGGAGCTGGTATCTTTGTGAAGACTCAGTACCTTCCGAGACTCTCCGAGATCTCTCATCTTTTCATTCTGAAATCCATTTGGAGCCGCACTCAGGAATCAGCTACAGCTGCCGTAGACATAGCTCGTAAGCATTTTCCCCAAGTAGAGACTAAGTGGGGAGATAACGGTTTTGATGACATCATTCACGATGGATCAATCGATGCTGTTGCCGTGGTCTTGGCTGGACAAAATCAGGTTGACATCTCACTCAGGTTGCTAAAGGCTGGTAAACATGTCCTTCAAGAAAAACCTGCAGCATCCTGTACAAGTGAATTGGAAGCTGCATTGTCTAGCTACAAATCTATTTCTTCTGATGCTCCCGGTCAATTAATTTGGTCTGTGGCTGAAAATTATCGATTTGAGCCTGGCTTAGTAGAGTGCAAGAAACTAATTGCTGGCATTGGGAAAATGATGAGTGTCCAAGTCATTATTGAAGGATCAATGAACAGTTCAAACCCCTATTTTTCAAGCTCTTGGAGGCGCAATTTCACTGGAGGTTTCATTCTTGATATGGGTGTGCATTTCATTGCAGGGTTAAGAATGCTTGTTGGGTGTGAGATTGTTTCAGTTTCAGCTATGACATCTCATGTGGATTTGACCTTACCTCCCCCAGATAATATATCATCTGTCTTTCATTTGGAGAATGGATGTTCAGGAGTGTTTGTAATGGTTGTCTCCTCCAGATCCCCCAAGACCTTGTGGCGAGTTGTTGGCTTGAATGGAACCCTGCAAGTTGAGCGTGGATTCCAAGGACAACATGGTTACCTGGTTTCATTTTATGGTACCGATGGACAAAACAAAAGCTCTTTTTTCCCATTCAGTGGAGTAACTGAAGAATTAAAAGCTTTTATTAATGATGTATCTGAAATCACCCTCAAGAAGCGGAATCAGTTTGTGACTGAGCCTCGCCTCTCTTATGTCGAAGGTGCAAGAGATGTTGCTGTGTTAGAGGCAATGCTTGAATCTGGAGCTAGGCAAGGTGAGTTAGTTCGTCTGAAAAAGTTTTGA >Glyma13g41780.2 sequence type=CDS gene model=Glyma13g41780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGAAGCAGCTTCCGCAGATCGCCATTCTGGGAGCTGGTATCTTTGTGAAGACTCAGTACCTTCCGAGACTCTCCGAGATCTCTCATCTTTTCATTCTGAAATCCATTTGGAGCCGCACTCAGGAATCAGCTACAGCTGCCGTAGACATAGCTCGTAAGCATTTTCCCCAAGTAGAGACTAAGTGGGGAGATAACGGTTTTGATGACATCATTCACGATGGATCAATCGATGCTGTTGCCGTGGTCTTGGCTGGACAAAATCAGGTTGACATCTCACTCAGGTTGCTAAAGGCTGGTAAACATGTCCTTCAAGAAAAACCTGCAGCATCCTGTACAAGTGAATTGGAAGCTGCATTGTCTAGCTACAAATCTATTTCTTCTGATGCTCCCGGTCAATTAATTTGGTCTGTGGCTGAAAATTATCGATTTGAGCCTGGCTTAGTAGAGTGCAAGAAACTAATTGCTGGCATTGGGAAAATGATGAGTGTCCAAGTCATTATTGAAGGATCAATGAACAGTTCAAACCCCTATTTTTCAAGCTCTTGGAGGCGCAATTTCACTGGAGGTTTCATTCTTGATATGGGTGTGCATTTCATTGCAGGGTTAAGAATGCTTGTTGGGTGTGAGATTGTTTCAGTTTCAGCTATGACATCTCATGTGGATTTGACCTTACCTCCCCCAGATAATATATCATCTGTCTTTCATTTGGAGAATGGATGTTCAGGAGTGTTTGTAATGGTTGTCTCCTCCAGATCCCCCAAGACCTTGTGGCGAGTTGTTGGCTTGAATGGAACCCTGCAAGTTGAGCGTGGATTCCAAGGACAACATGGTTACCTGGTTTCATTTTATGGTACCGATGGACAAAACAAAAGCTCTTTTTTCCCATTCAGTGGAGTAACTGAAGAATTAAAAGCTTTTATTAATGATGTATCTGAAATCACCCTCAAGAAGCGGAATCAGTTTGTGACTGAGCCTCGCCTCTCTTATGTCGAAGGTGCAAGAGATGTTGCTGTGTTAGAGGCAATGCTTGAATCTGGAGCTAGGCAAGGTGAGTTAGTTCGTCTGAAAAAGTTTTGA
>Glyma13g41780.1 sequence type=predicted peptide gene model=Glyma13g41780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATKQLPQIAILGAGIFVKTQYLPRLSEISHLFILKSIWSRTQESATAAVDIARKHFPQVETKWGDNGFDDIIHDGSIDAVAVVLAGQNQVDISLRLLKAGKHVLQEKPAASCTSELEAALSSYKSISSDAPGQLIWSVAENYRFEPGLVECKKLIAGIGKMMSVQVIIEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMLVGCEIVSVSAMTSHVDLTLPPPDNISSVFHLENGCSGVFVMVVSSRSPKTLWRVVGLNGTLQVERGFQGQHGYLVSFYGTDGQNKSSFFPFSGVTEELKAFINDVSEITLKKRNQFVTEPRLSYVEGARDVAVLEAMLESGARQGELVRLKKF* >Glyma13g41780.2 sequence type=predicted peptide gene model=Glyma13g41780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATKQLPQIAILGAGIFVKTQYLPRLSEISHLFILKSIWSRTQESATAAVDIARKHFPQVETKWGDNGFDDIIHDGSIDAVAVVLAGQNQVDISLRLLKAGKHVLQEKPAASCTSELEAALSSYKSISSDAPGQLIWSVAENYRFEPGLVECKKLIAGIGKMMSVQVIIEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMLVGCEIVSVSAMTSHVDLTLPPPDNISSVFHLENGCSGVFVMVVSSRSPKTLWRVVGLNGTLQVERGFQGQHGYLVSFYGTDGQNKSSFFPFSGVTEELKAFINDVSEITLKKRNQFVTEPRLSYVEGARDVAVLEAMLESGARQGELVRLKKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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