Glyma13g41770 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g41770

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41979436
stop:	41982707
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g41770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57880	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein \| chr3:21431198-21433519 REVERSE LENGTH=773	SoyBase	E_val: 0	ISS
GO:0000162	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR10024	Panther	SYNAPTOTAGMIN	JGI		ISS
PTHR10024:SF97	Panther	C2 DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF08372	PFAM	Plant phosphoribosyltransferase C-terminal	JGI		ISS
UniRef100_B9RI77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Synaptotagmin, putative n=1 Tax=Ricinus communis RepID=B9RI77_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M538	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M538_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g41770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g41770

Paralog	Evidence	Comments
Glyma15g03630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g41770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g342700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g41770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g41770

Limit To All Plant Sequences

>Glyma13g41770.3   sequence type=transcript   gene model=Glyma13g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTGCTATTGCTGATATATAGGAACTTTTATGTGTGAACATTATAGAGAATCAGTTTCCACCGATCACCCGTTTTTCTTTTTTCGTTTCATGTAGATTTCAAAGATGTATAGTTCCTTTTGTTTTTGGTCTTTAATGCATCTTCTGCTGCATACTGCAATGTCACTCTCCTCCTTTAAGAAGAAACTAGGAAGATATATAGGTGCACCAAGATGCTGTGACGTTTGAGGTTAATTGGTGAGTATAGTGTGTAAGAGAGGAAAATGCATAAACCAGCAGAGGCACTAGACTTTGCTCTCAAGGAGACTTCACCCAACATAGGTGCGGGTGCTGTAATGAGGGACAAGCTTTCCTGTACCTATGACCTGGTTGAACAAATGCAGTACCTCTATGTTAGAGTGGTGAAAGCCAAGGATTTGCCAGGGAAAGATGTTACTGGTGGTGTGGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCCTTACCAAGCACTTTGAGAAAAATTCCAATCCTCAGTGGAATCAGGTTTTTGCCTTCTCCAAAGAAAGGATTCAAGCTTCTGTTCTGGAGGTGGTGATCAAAGACAAGGATGTTGTTGTGGATGACTTCGTAGGGAGAGTGATGTTTGATATTAATGAAATCCCAAAACGTGTGCCTCCAGATAGCCCTTTGGCTCCACAGTGGTACAGGCTAGAAGATAGGAGGGGTGGCAAAGCCAAAGGAGAGTTAATGTTGGCGGTTTGGATGGGAACTCAAGCAGACGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAAGCTGTTGCAAACATAAGATCAAAGGTTTACCTTTCACCTAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAAGACTTGGTACCAAGTGACAAAACCCGGTATCCTGAAGTCTTTGTGAAGGCTAATCTGGGGGTTCAGTTTTTAAGAACTAGAGTATCTCAAAGTAAAACCATAAATCCAATGTGGAATGAGGACTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAGCCCTTGGTTCTGACTGCAGAGGACAGGGTTGGACCAAGCAAGGATGAGATCCTGGGAAGGTGTGTGATTCCTTTACACAATGTGCAAAGGAGGTTGGACCACAAGCCTGTGAACACAAAGTGGTTTAATCTGGAAAAGCATGTGGTTGTTGAAGGGGAACAGAAGAAGAAGGAGATCAAGTTCTCAAGTAGGATACATCTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGTTGGATGAATCAACACACTATAGTAGTGATCTTAGGCCAACTGCAAAGCAGCTGTGGAAGGCTAGCATTGGAATTCTGGAAGTTGGGATTATAAGTGCACAAGGGTTGATGCCAATGAAGACAAGAGATGGTAGAGGAACCACAGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGATCCGTACTAGGACAATTGTGGATAGTCTTGCTCCAAGGTGGAATGAGCAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAGTTGGGGTTTTTGATAATGGTCACTTACATGGGGGAGACAAATCAGGTGGATCAAAAGATTCAAGAATAGGGAAGGTGAGAATTAGGCTATCCACTCTTGAAGCTGATAGGGTGTACACACACTCTTATCCTCTTTTGGTACTGCACAATTCAGGTGTGAAGAAAATGGGAGAAGTGCAATTGGCTGTAAGATTCACAAGCTTATCTTTGATAAACATGCTGTGTATGTATTCACAGCCATTGTTGCCAAAGTTGCATTACATCCATCCTCTATCTGTGATTCAGCTAGACACTCTTAGGCATCAAGCTATCAAGATTGTGTCAATGAGGTTGAGCAGGGCTGAGCCACCACTGAGGAAAGAGGTGGTGGAATACATGCTAGATGTAGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCTAATTTCTTCAGAATAACCAAAGTTCTAGGAGGGTTGTTAGCCTTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAAAACCCTCTCACATCCATACTCATTCATATCCTTTTCATAATACTGGTTCTTTATCCAGAGCTAATACTTCCAACAATTTTCCTTTACCTTTTTTTGGTTGGAATTTGGAATTTCCGATGGAGGCCAAGACACCCTCCTCATATGGACACAAGACTATCACATGCTGATGCTGCTCATCCTGATGAACTAGATGAAGAGTTTGATACATTCCCAACTTCACGATCATCGGATATGGTTAGGATGAGGTATGATCGCTTAAGAAGCATTGCCGGGAAGGTCCAAACTGTTGTAGGTGACTTGGCCACTCAAGGAGAAAGGTTCCATAATCTGCTTAGTTGGAGAGACACAAGGGCTACCACTCTTTTTGTGACATTCTGTTTCATTGCTGCAGTAGTTCTCTATGTCACTCCCTTCCAAGTTGTGTTCCTTCTAATTGGCTTCTATTTGCTAAGGCACCCCAGATTCCGCCAGAAACATCCTTCAGTCCCATTCAACTACTTCAAGAGGTTGCCAGCTAGAGTAGACAGCATATTGTAAACATGCTCCTCTATCAGAGTTGCCTTGATCAGATATTTCAAGCCAGGGAAGAAACAATTGTGCAAATTGCTCCTCGATCACAATGTCTCAGATAATGTATTGTGTTTGTCCATATGAATTATAAAATTTCATGTGACTGCAACTATGCTCATCTATTGTGAATAGATTTTGCTTGCTTGTAACTCTGATGTTTTCAGTGTGCAAAACTAGTCATTACTATTTTCAGTGATTTGTAATATAGTTAATGTTACTATTGGACTGATCGCATTTTATTGTAGTTGACACAGTT

Coding sequences of Glyma13g41770

Limit To All Plant Sequences

>Glyma13g41770.2   sequence type=CDS   gene model=Glyma13g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAAACCAGCAGAGGCACTAGACTTTGCTCTCAAGGAGACTTCACCCAACATAGGTGCGGGTGCTGTAATGAGGGACAAGCTTTCCTGTACCTATGACCTGGTTGAACAAATGCAGTACCTCTATGTTAGAGTGGTGAAAGCCAAGGATTTGCCAGGGAAAGATGTTACTGGTGGTGTGGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCCTTACCAAGCACTTTGAGAAAAATTCCAATCCTCAGTGGAATCAGGTTTTTGCCTTCTCCAAAGAAAGGATTCAAGCTTCTGTTCTGGAGGTGGTGATCAAAGACAAGGATGTTGTTGTGGATGACTTCGTAGGGAGAGTGATGTTTGATATTAATGAAATCCCAAAACGTGTGCCTCCAGATAGCCCTTTGGCTCCACAGTGGTACAGGCTAGAAGATAGGAGGGGTGGCAAAGCCAAAGGAGAGTTAATGTTGGCGGTTTGGATGGGAACTCAAGCAGACGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAAGCTGTTGCAAACATAAGATCAAAGGTTTACCTTTCACCTAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAAGACTTGGTACCAAGTGACAAAACCCGGTATCCTGAAGTCTTTGTGAAGGCTAATCTGGGGGTTCAGTTTTTAAGAACTAGAGTATCTCAAAGTAAAACCATAAATCCAATGTGGAATGAGGACTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAGCCCTTGGTTCTGACTGCAGAGGACAGGGTTGGACCAAGCAAGGATGAGATCCTGGGAAGGTGTGTGATTCCTTTACACAATGTGCAAAGGAGGTTGGACCACAAGCCTGTGAACACAAAGTGGTTTAATCTGGAAAAGCATGTGGTTGTTGAAGGGGAACAGAAGAAGAAGGAGATCAAGTTCTCAAGTAGGATACATCTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGTTGGATGAATCAACACACTATAGTAGTGATCTTAGGCCAACTGCAAAGCAGCTGTGGAAGGCTAGCATTGGAATTCTGGAAGTTGGGATTATAAGTGCACAAGGGTTGATGCCAATGAAGACAAGAGATGGTAGAGGAACCACAGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGATCCGTACTAGGACAATTGTGGATAGTCTTGCTCCAAGGTGGAATGAGCAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAGTTGGGGTTTTTGATAATGGTCACTTACATGGGGGAGACAAATCAGGTGGATCAAAAGATTCAAGAATAGGGAAGGTGAGAATTAGGCTATCCACTCTTGAAGCTGATAGGGTGTACACACACTCTTATCCTCTTTTGGTACTGCACAATTCAGGTGTGAAGAAAATGGGAGAAGTGCAATTGGCTGTAAGATTCACAAGCTTATCTTTGATAAACATGCTGTGTATGTATTCACAGCCATTGTTGCCAAAGTTGCATTACATCCATCCTCTATCTGTGATTCAGCTAGACACTCTTAGGCATCAAGCTATCAAGATTGTGTCAATGAGGTTGAGCAGGGCTGAGCCACCACTGAGGAAAGAGGTGGTGGAATACATGCTAGATGTAGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCTAATTTCTTCAGAATAACCAAAGTTCTAGGAGGGTTGTTAGCCTTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAAAACCCTCTCACATCCATACTCATTCATATCCTTTTCATAATACTGGTTCTTTATCCAGAGCTAATACTTCCAACAATTTTCCTTTACCTTTTTTTGGTTGGAATTTGGAATTTCCGATGGAGGCCAAGACACCCTCCTCATATGGACACAAGACTATCACATGCTGATGCTGCTCATCCTGATGAACTAGATGAAGAGTTTGATACATTCCCAACTTCACGATCATCGGATATGGTTAGGATGAGGTATGATCGCTTAAGAAGCATTGCCGGGAAGGTCCAAACTGTTGTAGGTGACTTGGCCACTCAAGGAGAAAGGTTCCATAATCTGCTTAGTTGGAGAGACACAAGGGCTACCACTCTTTTTGTGACATTCTGTTTCATTGCTGCAGTAGTTCTCTATGTCACTCCCTTCCAAGTTGTGTTCCTTCTAATTGGCTTCTATTTGCTAAGGCACCCCAGATTCCGCCAGAAACATCCTTCAGTCCCATTCAACTACTTCAAGAGGTTGCCAGCTAGAGTAGACAGCATATTGTAA

>Glyma13g41770.3   sequence type=CDS   gene model=Glyma13g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAAACCAGCAGAGGCACTAGACTTTGCTCTCAAGGAGACTTCACCCAACATAGGTGCGGGTGCTGTAATGAGGGACAAGCTTTCCTGTACCTATGACCTGGTTGAACAAATGCAGTACCTCTATGTTAGAGTGGTGAAAGCCAAGGATTTGCCAGGGAAAGATGTTACTGGTGGTGTGGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCCTTACCAAGCACTTTGAGAAAAATTCCAATCCTCAGTGGAATCAGGTTTTTGCCTTCTCCAAAGAAAGGATTCAAGCTTCTGTTCTGGAGGTGGTGATCAAAGACAAGGATGTTGTTGTGGATGACTTCGTAGGGAGAGTGATGTTTGATATTAATGAAATCCCAAAACGTGTGCCTCCAGATAGCCCTTTGGCTCCACAGTGGTACAGGCTAGAAGATAGGAGGGGTGGCAAAGCCAAAGGAGAGTTAATGTTGGCGGTTTGGATGGGAACTCAAGCAGACGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAAGCTGTTGCAAACATAAGATCAAAGGTTTACCTTTCACCTAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAAGACTTGGTACCAAGTGACAAAACCCGGTATCCTGAAGTCTTTGTGAAGGCTAATCTGGGGGTTCAGTTTTTAAGAACTAGAGTATCTCAAAGTAAAACCATAAATCCAATGTGGAATGAGGACTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAGCCCTTGGTTCTGACTGCAGAGGACAGGGTTGGACCAAGCAAGGATGAGATCCTGGGAAGGTGTGTGATTCCTTTACACAATGTGCAAAGGAGGTTGGACCACAAGCCTGTGAACACAAAGTGGTTTAATCTGGAAAAGCATGTGGTTGTTGAAGGGGAACAGAAGAAGAAGGAGATCAAGTTCTCAAGTAGGATACATCTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGTTGGATGAATCAACACACTATAGTAGTGATCTTAGGCCAACTGCAAAGCAGCTGTGGAAGGCTAGCATTGGAATTCTGGAAGTTGGGATTATAAGTGCACAAGGGTTGATGCCAATGAAGACAAGAGATGGTAGAGGAACCACAGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGATCCGTACTAGGACAATTGTGGATAGTCTTGCTCCAAGGTGGAATGAGCAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAGTTGGGGTTTTTGATAATGGTCACTTACATGGGGGAGACAAATCAGGTGGATCAAAAGATTCAAGAATAGGGAAGGTGAGAATTAGGCTATCCACTCTTGAAGCTGATAGGGTGTACACACACTCTTATCCTCTTTTGGTACTGCACAATTCAGGTGTGAAGAAAATGGGAGAAGTGCAATTGGCTGTAAGATTCACAAGCTTATCTTTGATAAACATGCTGTGTATGTATTCACAGCCATTGTTGCCAAAGTTGCATTACATCCATCCTCTATCTGTGATTCAGCTAGACACTCTTAGGCATCAAGCTATCAAGATTGTGTCAATGAGGTTGAGCAGGGCTGAGCCACCACTGAGGAAAGAGGTGGTGGAATACATGCTAGATGTAGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCTAATTTCTTCAGAATAACCAAAGTTCTAGGAGGGTTGTTAGCCTTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAAAACCCTCTCACATCCATACTCATTCATATCCTTTTCATAATACTGGTTCTTTATCCAGAGCTAATACTTCCAACAATTTTCCTTTACCTTTTTTTGGTTGGAATTTGGAATTTCCGATGGAGGCCAAGACACCCTCCTCATATGGACACAAGACTATCACATGCTGATGCTGCTCATCCTGATGAACTAGATGAAGAGTTTGATACATTCCCAACTTCACGATCATCGGATATGGTTAGGATGAGGTATGATCGCTTAAGAAGCATTGCCGGGAAGGTCCAAACTGTTGTAGGTGACTTGGCCACTCAAGGAGAAAGGTTCCATAATCTGCTTAGTTGGAGAGACACAAGGGCTACCACTCTTTTTGTGACATTCTGTTTCATTGCTGCAGTAGTTCTCTATGTCACTCCCTTCCAAGTTGTGTTCCTTCTAATTGGCTTCTATTTGCTAAGGCACCCCAGATTCCGCCAGAAACATCCTTCAGTCCCATTCAACTACTTCAAGAGGTTGCCAGCTAGAGTAGACAGCATATTGTAA

Predicted protein sequences of Glyma13g41770

Limit To All Plant Sequences

>Glyma13g41770.2   sequence type=predicted peptide   gene model=Glyma13g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHKPAEALDFALKETSPNIGAGAVMRDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGGVDPYVEVKLGNYKGLTKHFEKNSNPQWNQVFAFSKERIQASVLEVVIKDKDVVVDDFVGRVMFDINEIPKRVPPDSPLAPQWYRLEDRRGGKAKGELMLAVWMGTQADEAFPDAWHSDAATVGPEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPSDKTRYPEVFVKANLGVQFLRTRVSQSKTINPMWNEDLMFVAAEPFEEPLVLTAEDRVGPSKDEILGRCVIPLHNVQRRLDHKPVNTKWFNLEKHVVVEGEQKKKEIKFSSRIHLRVCLEGGYHVLDESTHYSSDLRPTAKQLWKASIGILEVGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSLAPRWNEQYIWEVFDPCTVITVGVFDNGHLHGGDKSGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGEVQLAVRFTSLSLINMLCMYSQPLLPKLHYIHPLSVIQLDTLRHQAIKIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRITKVLGGLLAFGRWFDQICNWKNPLTSILIHILFIILVLYPELILPTIFLYLFLVGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDMVRMRYDRLRSIAGKVQTVVGDLATQGERFHNLLSWRDTRATTLFVTFCFIAAVVLYVTPFQVVFLLIGFYLLRHPRFRQKHPSVPFNYFKRLPARVDSIL*

>Glyma13g41770.3   sequence type=predicted peptide   gene model=Glyma13g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHKPAEALDFALKETSPNIGAGAVMRDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGGVDPYVEVKLGNYKGLTKHFEKNSNPQWNQVFAFSKERIQASVLEVVIKDKDVVVDDFVGRVMFDINEIPKRVPPDSPLAPQWYRLEDRRGGKAKGELMLAVWMGTQADEAFPDAWHSDAATVGPEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPSDKTRYPEVFVKANLGVQFLRTRVSQSKTINPMWNEDLMFVAAEPFEEPLVLTAEDRVGPSKDEILGRCVIPLHNVQRRLDHKPVNTKWFNLEKHVVVEGEQKKKEIKFSSRIHLRVCLEGGYHVLDESTHYSSDLRPTAKQLWKASIGILEVGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSLAPRWNEQYIWEVFDPCTVITVGVFDNGHLHGGDKSGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGEVQLAVRFTSLSLINMLCMYSQPLLPKLHYIHPLSVIQLDTLRHQAIKIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRITKVLGGLLAFGRWFDQICNWKNPLTSILIHILFIILVLYPELILPTIFLYLFLVGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDMVRMRYDRLRSIAGKVQTVVGDLATQGERFHNLLSWRDTRATTLFVTFCFIAAVVLYVTPFQVVFLLIGFYLLRHPRFRQKHPSVPFNYFKRLPARVDSIL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain