SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G20480 | AT | Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr1:7094978-7097073 REVERSE LENGTH=565 | SoyBase | E_val: 4.00E-19 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016207 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity | SoyBase | N/A | ISS |
| KOG1176 | KOG | Acyl-CoA synthetase | JGI | ISS | |
| PTHR22754 | Panther | DISCO-INTERACTING PROTEIN 2 (DIP2)-RELATED | JGI | ISS | |
| PTHR22754:SF4 | Panther | ACYL-COA SYNTHETASE-RELATED | JGI | ISS | |
| PF00199 | PFAM | Catalase | JGI | ISS | |
| PF00501 | PFAM | AMP-binding enzyme | JGI | ISS | |
| PF00550 | PFAM | Phosphopantetheine attachment site | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| UniRef100_G7IUG4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Bifunctional protein aas n=1 Tax=Medicago truncatula RepID=G7IUG4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7IUG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional protein aas n=1 Tax=Medicago truncatula RepID=G7IUG4_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma13g41761 not represented in the dataset |
Glyma13g41761 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g03641 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g342600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g41761.1 sequence type=CDS gene model=Glyma13g41761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCAGAAAGATCAGTAGAGGATCAATTCTCCAAGCTGCATCCTTCCATGCCAGTAAACACCAGAATTGGAATAGTGGGTGCTGGTCCAAGTGGCTTATCAGTTGCTTATGCACTGGTCAGACTTGGTTATAATAATATCACTGTCTTGGAGAAGCATCATACAGTTGGTGGCATGTGTGAATCAGTTGAAATTGAAGGAAAAATATATGATCTAGGTGGCCAAGTTTTGGCTGCAAGCAGTGCTCCTGTCATCTTTCACTTGGCAAAAGAGACAGGCTGTACACTAGAAGAAATGAACTCCCACAAGCTTGCTGTTATTGACAGCTCCTCTGGAAAATACCAAGATGTTAAAGTTGCTGATGATTATGTATCTGTTATGTCACTAACATTGCAAATCCAAGAAAAGGTGAAGAATTCTGGTCGTTTTGGGGTTCATGCTCTCAGTGAAGTTGCTTCAGACTTAGCTCCAGATTATCTTGAGCGTCATGGACTTAAATCTGTTCCTAAATCTGTGGCTTATGGTTATACTGCTTCAGGATATGGATTTATTCAAGACATGCCTTATGCTTACATTCATGAATTTACCAGAACTTCCATGGCTGGAAAAATTCGACGATTCAAAGGTGGATATACAAGTCTTTGGCAGAGGATTGCTGAATCAATTCCAATAAAACTTCACTATAGCACTGAGGTGTTGGCAATCAGGCGGAACTCTGACACTGTCACTGTTAATGTCAAGGGCTCAAATGAAATCGAAACTATGGAATTTGATAAGATCATAATCTCTGGTAACTTTCCATTAAAATATGGAAGAACTTATAGATCGGCGCCTTCAACTTGCTTAGAGAATGAAACAGAAGTAATGGATGCAAGTGAGCTTGAAAAGGATTTATTCAGCAAAGTAGAAACAAATGACTACTACACAACAGTTTTAAAGATCAAAGGGCTGGAACGTATGCCGGTTGGATTTTATTATTTTAGTGAATATATGGAAGATCCCAGCACAATTGGAAATCCAGTTGCCATGCAGAAATTTTATGCTGACAGTAACATATTCTTGTTCTGGTCCTATGGAAACTCTGCTGATATTAAGGGACCAACTGTCACTGAGCTTGCAATCAAATCAATAGAATCCATGGGGGGAGAAGTTCAGAATATCATTCTTCAACGTCGCTTTAAGTATTTTCCTCATGTTAGCAGTCAAGATATGAGAAACGGATTCTATGAAAAGTTGGAGTCAGAGCTTCAAGGCTCGAGGAATACTTATTATGTTGGTGGGCTTATGGCATTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTTTGATCTGCAAGAACTTTGCAAATAGCAGTGATTTGCCAGTGTTTCCTTACACTAAGAGTTTGTTTCCCTTGCAAACTGATATCCAGAAAAAGGAGCCTAAAGAACTAGTTGAATTGCCTGGAGTGCAATTTCCCAATTTGCCTGCTTTGAATAGCTATTTAAAGCACTGGGGAACTCATCCAATCACTCAAAACAGAACTCTTTATACTTGGCTAAATGAAGGAGGGACTGTGGTTGGCAAGAGGACATATGGAGAACAACATTTAAATGCTTCTTGCATTGCACATAAGCTCTTAACAAGCCAAAAGCCGGTTATCAAGCCTGGTGACAGGGTTCTCCTAGTCTATGTTCCTGGCCTAGATTTTGTTGATGCCTTCTTTGGATGTCTAAGAGCTAAAGTTTTACCAGTCCCAGTTCTTCCCCCAGACCCCATGCAGAGAGGTGGACAAGCACTTCTTAAAATTGAGAACATTGCCAAGTCATGCGGCATAGTGGCAATTTTATCAACGGCATCTTACCACACAGCAGTACGTGCCGGTCTAGTGAAAAGCTTGATCTCATTAACTGGGAAAAATGGTAAATACACAGCTCAATGGCCAAAACTTCCGTGGCTGCACACCGATACTTGGGTCAATAACTCAAGAAATTCGGCTGTGGAAGATGTAGATGATCAATGTGAACCCCAGCCTGGTGATGTATGTTTCTTGCAGTTTACCTCAGGTTCAACTGGTGATGCTAAAGGAGTCATGATAACACATGGAGGGCTCGTTCACAATGTGAAGTTGATGAGAAGTAGATACAAGAGCACCTCAAGGACAGTGCTAGTGAGTTGGCTTCCTCAATATCATGACATGGGGCTGATTGGAGGACTTTTTACAGCTCTTGTTAGTGGTGGATCTGCTGTACTGTTTTCACCATTGACATTTATTAAGAAGCCACTCTTATGGCTTGAAACCATCAGCAAGTATCAAGCAACTCACAGTGCCGGACCCAACTTTGCTTTTGAGTTGGTGGTTCGAAGGTTAGAGTCCGAGAAAGACAAGCTTCAGAGTTTAGACCTTTCATCCATGATTTTCCTTATGGTTGCTGCTGAGCCAGTGAGGATGAAGACCTTGAAAAGATTTCTTGATCTAACCACTCCTTTTGGCTTATCTCAAAAGGTGATGGCTCCAGGATATGGCTTAGCAGAAAATTGTGTGTTTGTGAGTTGTGCATTTGGAGAAGGATGTCCTATTCTTGTTGATTGGCAAGGAAGAGTTTGTTGTGGATATATTCACCCAGGCGATTCAGACGTTGACATTATAATAGTTGATCCAGAGAGTGGTGAAGAGCTTGAGGAAGATGGAAGGGAAGGAGAAATCTGGATAAGTAGTCCAAGTGCTGGAATAGGATACTGGGGAAAGGAAGAACTGAGTCAGAAAACTTTTAGAAATAAGCTTCAGAACCATCCTGGACGCAACTACACAAGAACTGGAGACTTGGGAAGAATTATAGATGGGAAGCTATTCATCACTGGGAGAATCAAGGATCTTATCATTGTGGCTGGAAGAAACATCTACTCAGCAGATGTTGAAAAGACGGTTGAGAGTTCATCTGAATTTCTTCGTCCGGGATGCTGTGCAGTCATTGGTGTCCCTGAGGAGATTTTATCAGCAAAGGGGATTTCCCTGCCAGATGGATCAGACCAAGTTGGCTTGGTTGTGGTTGCTGAAGTAAGGGATGGTAAAACAGTTAGCAAAGATGTGATTGAGCATATTCAGACACGTGTGGTTGAAGAACATGGAGTTAGTGTTGCTTCTGTCAAGTTGATCAAGCCAAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAGTGTCTCAAACAGTTTTCAGATGAAACACTGAACCTGGTTCCACAACCTATTTTGACAAAGAAATCACTGTTGAGGTCATTTACTACAGGAACATGCAGAGAAGGAAGAACACCTCGGGCACATTTGGTGAGAAGTAGTTCTCCTCTACCTATTCCAAGAATCAGCAACAAGGAAATTGTGGAACACTTGAAAAGGATTATTTCTGACCAGTCTGGAATCCCGGTCAACAATATCTCAGTCACAGACAACATGTCAACCTATGGAATTGATTCAATTGGAGTGGTCAAAGCAACTCAAAAACTCACAGATTTCCTGGGAGTGCCAGTTGCGGCTATAGATGTTTTCACTGCATCATGCATTCAAGAATTGGCTAACTTCTCTGAGAATCTTCTACTCAAGTCTCAACCTCAACTCATGAGCAATTCACCACATGCTCCAGAAGCTGAAATTGATTTTACTGAAGTGGTTGTGGATGTATCCAAGTCTCGCCAATGGGTGGACATCACCGACCCATCTCTGGTTTCAATTGGAGATGAAGTTGCCATTGCAGAAGGGGTTTTGGTTCAAAGCCATGAGGTGAAGAATGGAATTCTAAGTTTCCTTCCTATTAGAATAGGTAAAAATTCTTCAATTGGACCTTATTCTATTATTCAAAAAGGAAGTATCATCAAAGAAGGATCTGAAGTACAACCCCTGCAAAAGGTTGAAGGAGGCCAACATGTACTCAAACCTGCTAAGCATAATAACGTTAAAGAGAATGCCCTGTTGCTTGTTTCTACCAGCAAAATACAGTCCAATGCCATGTACCATTTTCTGGGGATCTATCTCACTGGCTTTCTCAGCTCCCTTGCTTCAGCTATTGCTTACATCTTGTACATAAGGCTCTTCCAGATACCTGCATCATTCCAACACTTCTCATTTCTTTGTGTATGCGGTGCCTTCCACTGGATCCCATTTACCGTTGTTGCATATGCCACCATGTTTTCTGATGTCCCATCAAATCCCATTGCCTTTACCATTTCATTTACCAGCGCATATCTGCTTCATGGCCTCATACTCACCTCTCTCACTTGTGCTTTGACACGTTTGCTAAAATTCAACCAAAATCAAACCCATTTCAAAACCTGGCTTAGACATCAATTGACCATTTCCTGCCACCATAGATTTGCAAAGCTTCTCTCAGGAACAGAAGCCTTCTGCTTATATTTACGCCTTTTGGGTGCAAAAATTGGCAAACACTGTTCCATTAGAGCCATCAACCCAGTTTCTAACCCTGAGTTAATGTCAATAGGCGATGGTGTCCATCTTGGTGATTTCAGCAAGATAATCACCGGTTTTCACTATTCCAATGGATATGCTTGTGGAAAAGTAGAGGTTCAGGATAATTCAGTTGTGGGGAGTCAAAGCCTAATCCTCCCAGGTTCTGTTGTAGAAAAGAATGTCATTCTAGGTGCACTTTCAGTTGCTCCAATGAATTCTATCCTCCATGAGGGTAGCGTGTATATCGGATCTCAAACCCGAGTTGCAACCAGAAACTCTTCGTATCATTTAGATGAAAGGATAGAGGAGATGGACATGGAGTACAAAAAAGTAGTTGCAAACATGGCTGCAAATTTAGCCGTCACTACTATTAATGTCAAAGCAAGATATTTCCACCGCATTGGTGTTAGTGGAAAGGGACACTTGAAAATCTATGACAAACTTGATGGCAATATTCCACTACACAAGATTTTTTACCCTGGAAAAAGCTACCCTATCATGTTAAGACACAGTAATAGCTTGAGTGCTGATGATGATGCAAGGATTGATGCACGTGGTGCAGCTTTGAGGATTCTTTCTGATGAATCACCAGATTCTAATAACCTGCAGCATGCTTCCCTCATTGACCTGACACTAAAAACTGGCAACGCATTTTATGCTCGCACTCTTGCTGATTTTGCAACCTGGCTTGTGTGTGGACTTCCAGCGAGGGAGGAACTTGTTAAGCGCACCCCACATGTTCGTGATGCAGTGTGGAATTCCCTTAGACATGCAAACTCATACGCTGAATTGCACTACTATTCAAACATTTGCAGGCTTATGCGCTTCACTGATGGACAAGAAATGTACGTGAAGTTTAAGCTAAGACCTATTGACACAAGCATTAGTGAGGACACAGGTAAGGTTGTACCAACTGGGATTCTTCCACCAGAAACGGGTGCAATTCCTAGGGATGAAAAGGACACACGTCCTTTGCTTTTCCTTGCTCAAGATTTTCAACGCCGTGTGAATTCTCCTGGTGGAGTTTGTTATGTGTTTCAATTGCAACTCCGAGCAGTGCCAGAAGATGAAGCCGCACGTGACATTGCACTGGACTGCACCAAACCATGGGATGAAAATGAGTTCCCTTACATTGATGTTGGAGAGGTAAACATCAATGAGAATCTCTCTACGGAAGAATCAGATAGGCTTGAATTTAACCCTTATCTCAAAAGCCATGAGTTGGATGTGATCCCTGCTACTTCCAACACCCAAAGTGCTTCAATTGATCATGGCCGTTCATTGATCTATGAGATTTGCCAGCACGTTCGTAACAGACAGCCACTCCCAGAATCTTGGAGGAACCTCGTAGAGCAATCTAACGTTAAGGTAGACTTGTCTTGCTGTCCCGTGGCAGCAGCATTGCCCAAAAAGGAGACGACAAAGAAAGTTACAACAACCTTAACCTTGACAAGAACCTGGTACCAGACATTCTCAGCACTTTTCACTCAACCGTTGCTGCAAACTGTTTTGCCTTACACGGTGATGGGTTTAGCAGTTTTTGCTCCTTTGAACTTTCTTGTTAACCTTAAGAACGTTGAGAAACTCCAAGTGCAATGGTTCTTTCCTTTGTTTTGGGTTGTCTCGGGTGTCATGGCTGCACTGGCATGTGTTGTGACCAAATGGGTTCTCGTGGGAAGAAAAAAAGAGGGTGAAACCGTGCCCTTATGGAGCAAAAGGGTAATCATGGATAGCACGTGGCAAGCGATTAGAACCTTGGTTGGGGATTATTTCATGGACATGGCAAGTGGGTCGTTTTTGTTTGTGATGTGGATGAAGTTGATGGGTGCGGACATAGACATGGATGGTGGTGGGGCCTACGTGGACAGCACCGGGGCTATGTTGAACCCTGAAATGGTGACGATTGAGAGAGGGGGTTGTGTGGGAAGAGAGGCATTGCTATTTGGACACATATATGAAGGTGATGAAGGTGGAATGGTGAAGTTTGGGGGAATCAAAATTGGTGAAGATGGGTTTGTGGGAAGTAGAGCTGTGGTCATGCCTGGTGTGCATGTGGAGAATGAGGCCAATCTTTCTGCTTTGTCTCTCGCCATGAAAGGAGAAACAGTTAGGTCAAGATAA
>Glyma13g41761.1 sequence type=predicted peptide gene model=Glyma13g41761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPERSVEDQFSKLHPSMPVNTRIGIVGAGPSGLSVAYALVRLGYNNITVLEKHHTVGGMCESVEIEGKIYDLGGQVLAASSAPVIFHLAKETGCTLEEMNSHKLAVIDSSSGKYQDVKVADDYVSVMSLTLQIQEKVKNSGRFGVHALSEVASDLAPDYLERHGLKSVPKSVAYGYTASGYGFIQDMPYAYIHEFTRTSMAGKIRRFKGGYTSLWQRIAESIPIKLHYSTEVLAIRRNSDTVTVNVKGSNEIETMEFDKIIISGNFPLKYGRTYRSAPSTCLENETEVMDASELEKDLFSKVETNDYYTTVLKIKGLERMPVGFYYFSEYMEDPSTIGNPVAMQKFYADSNIFLFWSYGNSADIKGPTVTELAIKSIESMGGEVQNIILQRRFKYFPHVSSQDMRNGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALICKNFANSSDLPVFPYTKSLFPLQTDIQKKEPKELVELPGVQFPNLPALNSYLKHWGTHPITQNRTLYTWLNEGGTVVGKRTYGEQHLNASCIAHKLLTSQKPVIKPGDRVLLVYVPGLDFVDAFFGCLRAKVLPVPVLPPDPMQRGGQALLKIENIAKSCGIVAILSTASYHTAVRAGLVKSLISLTGKNGKYTAQWPKLPWLHTDTWVNNSRNSAVEDVDDQCEPQPGDVCFLQFTSGSTGDAKGVMITHGGLVHNVKLMRSRYKSTSRTVLVSWLPQYHDMGLIGGLFTALVSGGSAVLFSPLTFIKKPLLWLETISKYQATHSAGPNFAFELVVRRLESEKDKLQSLDLSSMIFLMVAAEPVRMKTLKRFLDLTTPFGLSQKVMAPGYGLAENCVFVSCAFGEGCPILVDWQGRVCCGYIHPGDSDVDIIIVDPESGEELEEDGREGEIWISSPSAGIGYWGKEELSQKTFRNKLQNHPGRNYTRTGDLGRIIDGKLFITGRIKDLIIVAGRNIYSADVEKTVESSSEFLRPGCCAVIGVPEEILSAKGISLPDGSDQVGLVVVAEVRDGKTVSKDVIEHIQTRVVEEHGVSVASVKLIKPRTISKTTSGKIKRFECLKQFSDETLNLVPQPILTKKSLLRSFTTGTCREGRTPRAHLVRSSSPLPIPRISNKEIVEHLKRIISDQSGIPVNNISVTDNMSTYGIDSIGVVKATQKLTDFLGVPVAAIDVFTASCIQELANFSENLLLKSQPQLMSNSPHAPEAEIDFTEVVVDVSKSRQWVDITDPSLVSIGDEVAIAEGVLVQSHEVKNGILSFLPIRIGKNSSIGPYSIIQKGSIIKEGSEVQPLQKVEGGQHVLKPAKHNNVKENALLLVSTSKIQSNAMYHFLGIYLTGFLSSLASAIAYILYIRLFQIPASFQHFSFLCVCGAFHWIPFTVVAYATMFSDVPSNPIAFTISFTSAYLLHGLILTSLTCALTRLLKFNQNQTHFKTWLRHQLTISCHHRFAKLLSGTEAFCLYLRLLGAKIGKHCSIRAINPVSNPELMSIGDGVHLGDFSKIITGFHYSNGYACGKVEVQDNSVVGSQSLILPGSVVEKNVILGALSVAPMNSILHEGSVYIGSQTRVATRNSSYHLDERIEEMDMEYKKVVANMAANLAVTTINVKARYFHRIGVSGKGHLKIYDKLDGNIPLHKIFYPGKSYPIMLRHSNSLSADDDARIDARGAALRILSDESPDSNNLQHASLIDLTLKTGNAFYARTLADFATWLVCGLPAREELVKRTPHVRDAVWNSLRHANSYAELHYYSNICRLMRFTDGQEMYVKFKLRPIDTSISEDTGKVVPTGILPPETGAIPRDEKDTRPLLFLAQDFQRRVNSPGGVCYVFQLQLRAVPEDEAARDIALDCTKPWDENEFPYIDVGEVNINENLSTEESDRLEFNPYLKSHELDVIPATSNTQSASIDHGRSLIYEICQHVRNRQPLPESWRNLVEQSNVKVDLSCCPVAAALPKKETTKKVTTTLTLTRTWYQTFSALFTQPLLQTVLPYTVMGLAVFAPLNFLVNLKNVEKLQVQWFFPLFWVVSGVMAALACVVTKWVLVGRKKEGETVPLWSKRVIMDSTWQAIRTLVGDYFMDMASGSFLFVMWMKLMGADIDMDGGGAYVDSTGAMLNPEMVTIERGGCVGREALLFGHIYEGDEGGMVKFGGIKIGEDGFVGSRAVVMPGVHVENEANLSALSLAMKGETVRSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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