Glyma13g41400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g41400

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41698573
stop:	41704159
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g41400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59210	AT	Annotation by Michelle Graham. TAIR10: myosin heavy chain-related \| chr5:23890802-23893619 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
PTHR10918	Panther	HOMER	JGI		ISS
PTHR10918:SF8	Panther	OS03G0268100 PROTEIN	JGI		ISS
UniRef100_I1M4Z3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Z3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HS23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T-snare n=1 Tax=Medicago truncatula RepID=Q2HS23_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g41400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g41400

Paralog	Evidence	Comments
Glyma15g04000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g41400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g339200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g41400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g41400

Limit To All Plant Sequences

>Glyma13g41400.1   sequence type=CDS   gene model=Glyma13g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGCGCCATGCAACTCTTGGTCGACGAACGTTGGAGGAAATTCGGCAAAAGAGGGCCGCGGAGAGATTGAGCAAAACCTCTTCGGGACCAGATCTCGGGCAGGTTCCCAGCACCTCCGAGACTTCGGGAATGAGCAAATCCGAGAGCGCAAATAGGCTCTCTGAGACAGATCTTAGTGCTCTATTGTCTCAATTGAAAGGTCTGCAAAAGAAGAACACGGAGTTGGAGGAAGAAAACAGGAAAATTACTTTAAAGCTTCAAACGATGGAAATTGATAATGAGGCAATGCACAAACAGTTGAATGATCTGGAACAAAATACAGTGCCATCTCTACGGAAAGCTCTGAGGGATGTCGCAATGGAGAAAGATGCTGCAGTTGTTGCACGGGAGGACCTTTCAGCACAGCTTCGTATGCTGAAGAAACGTCTTAAGGAAGCAGAAGATGAGCAATATCGTGCTGAGGAACATGCAGCAGCGTTGAGAGCAGAATTGAACTCAATTCAGCAACAAGCAATGAATAATACAGTTAGCACAATTTCATCATTTGGTAATCCACCAGATCATTTTCAAATTCAAAGATTACAAAAGGAGCTAGGTGATTTAAAACTGGAACTGCAGCGAGAATCACTGTTGAGGCACCAGGAGCAGGAACAGTTAGCAAAAGAGCAAACCCACATTACCTCACTGATATCTGAAAAGCAGGAGTTGGAAGAGAAACTCATGTTGATGTCTAGAGAGGCTGCAGAAGTCTCAGATAAAGCTTCTCACAAAGCATTTTCTTTGGAAGACAAGCAGAAACTTGATAGGCAGTTGCATGATATGGCTTTAGCCATTGAGAGGTTGGAAAGCAGTAGGCAGAAACTTCTAATGGAGATTGACTCACAATCTACTGAAATAGAGAGGCTTTTTGAGGAAAATTCTAATCTCTCAAATTCGTACCAAGAGGCAGTTGGGGCAGCAGCAAGATGGGAAAACCAGGTAATGGAGTGTCTTAAGCAAAATGAAGAGCTTCGTGGTATTCTAGATAATTTGAGAATGGAACAGGCTAGGGGTTTGCCAGACTCTTCTAAAAATGGGGAACATGAGATTGCTTCCTTGGCATCTATGAAGGGCCAACTTGTGTCAGAACAGAGCAGAGCAGAGGTGCTATCTGCAGAAGTCATGCAGCTTTCTGCTCAACTTGAACAAGTTAAACAAGCATATGATGGTCTCGCACGCTTCTATAGGCCAGTGCTGCGCAACATTGAAAGCAATCTCATAAAAATGAAGCAAGACAGCTCGTTGGCTGTACGATGA

Predicted protein sequences of Glyma13g41400

Limit To All Plant Sequences

>Glyma13g41400.1   sequence type=predicted peptide   gene model=Glyma13g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEARHATLGRRTLEEIRQKRAAERLSKTSSGPDLGQVPSTSETSGMSKSESANRLSETDLSALLSQLKGLQKKNTELEEENRKITLKLQTMEIDNEAMHKQLNDLEQNTVPSLRKALRDVAMEKDAAVVAREDLSAQLRMLKKRLKEAEDEQYRAEEHAAALRAELNSIQQQAMNNTVSTISSFGNPPDHFQIQRLQKELGDLKLELQRESLLRHQEQEQLAKEQTHITSLISEKQELEEKLMLMSREAAEVSDKASHKAFSLEDKQKLDRQLHDMALAIERLESSRQKLLMEIDSQSTEIERLFEENSNLSNSYQEAVGAAARWENQVMECLKQNEELRGILDNLRMEQARGLPDSSKNGEHEIASLASMKGQLVSEQSRAEVLSAEVMQLSAQLEQVKQAYDGLARFYRPVLRNIESNLIKMKQDSSLAVR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain