SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07480 | AT | Annotation by Michelle Graham. TAIR10: Transcription factor IIA, alpha/beta subunit | chr1:2296706-2299215 REVERSE LENGTH=375 | SoyBase | E_val: 3.00E-129 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005672 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: transcription factor TFIIA complex | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG2652 | KOG | RNA polymerase II transcription initiation factor TFIIA, large chain | JGI | ISS | |
| PTHR12694 | Panther | TFIIA LARGE SUBUNIT-RELATED | JGI | ISS | |
| PTHR12694:SF2 | Panther | STONED-RELATED | JGI | ISS | |
| PF03153 | PFAM | Transcription factor IIA, alpha/beta subunit | JGI | ISS | |
| UniRef100_G7IRY2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor/ transcription initiation factor n=2 Tax=Medicago truncatula RepID=G7IRY2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M4Z1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Z1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g41390 not represented in the dataset |
Glyma13g41390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g04006 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g339000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g41390.2 sequence type=transcript gene model=Glyma13g41390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGAAAAATACTCGTGAGAAGAGGAAACGGGGGGTGTTGGAGTAGTGGGAAAGATCAAGAAGAAGAGGATATTGACACGTGCGGCTGTGTTTAAAATCGGATGCAAACCTATTTATATTCCTCTCTTTATTCTCTCTTTCTCGTCCGTCTCTTCTCTCTCTTCGCCGTTGGTTTCACTCAGCTCTCACTCTCATCCCCATCCCAAACCCTAGCCTCGCTATTTTTCATGATTCCTCTCGATCTCTTCCACTGAACTCTCTCTCAAATCGGTCGTATACGGAGAATTATCGGAGACACTCGGAGGTCTGCTAAAATTAACATTCGCGATGGCGGCTTCCACTACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGTGACGAGTTCGTGAACAACGGTGGTCCTGGAGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCGAAGATGATGCAAGCTGGTGCTGTGCTCGGTCCCATAGAAAGGTCCACTGCAGCTAAGCCAACTCCTGGTGGTCCAATTACTCCGGTTCATGATCTCAACGTACCGTATGAGGGGACCGATGAGTATGAGACTCCTACAGCGGATATGCTTTTCCCCCCTACACCATTGCAAACTCCAATTCAAACCCCTCTACCAGGAACTGGGGATAACTCAACGTATAACATTCCTACTGGACCAAGTGACTACCCCTCTTCTGGAAATGACACAGGAGGAAATGCTGATGGAAAAGGAGCAAGACCTGCTCCATATATGCAATCTCCTTCTCCTTGGATGAACCAAAGGCCTCCACTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAGGCAGACAGGGGAACTTCTAATCAACCTCCGACACAGGACTTCTTCACGATGCCATCAGGAAAGCGAAAACGCAATGATTTAACTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGGGATGCTACACATGGAGATTTTGAAATTGAGGTAAGTGGAAGGGGCATCTCTATTAATTCACATCACACTATTTCCAAAGGAAAAATGTCAGCAGATTTGGAGAGGTCGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCATATGATGATGATGATGTGCTCTCTACTCCAAATATATACAACTATGGAGAAGTGTTCAGTGAAGACTACAACATTTCTAATACACCAGCTCCTCCTGAAGTACCAGCAAGCACCCCTGCTCTCTTGGTTCAGAATGAAGTGGGTAATGATTTTGATGATGATGATGATGATGAACCTCCATTAAATGAAGAGGATGATGATGATTTAGATGACATGGAACAAGGAGAGGATCAAAATACACATCATCTTGTTTTGGCCCAGTTTGATAAGGTGACACGTACCAAGAGCAGGTGGAAATGCACATTAAAGGATGGCATCATGCACATAAATAATAAGGACATTCTCTTCAATAAGGCGACAGGAGAGTTTGAATTCTGATTTTGTTGGGGCTGGCGCTTTCGTGAAATATGATTCGGAGGTGTCATTGTGTGTTTCATGATCCCTTTCTTTGATTATAATTATTAAGTGAAAGATTGATGAAGATAGGAATATTTTTACCCTTTCGAGACTATTGTGATGTTGGCCTCTTGTACATAGAGAATGAGCAATTTTTTGCCTTTAACTGATGGTTAGAGACTCGGGCATTTCCTTTAAGCCCACCATTTGTCAAGTATGTGGTTTCTTTAGTTCTGTATACTTGAACATTTTAGTGAATTTAAGAATCCCTTGTATGATAATAATGATAGATAGGCTTGTTAGGCCTCGCGTAACTTTTTGACATTAAAAAACAGGATGATGTTTTTTTTTTCTTATTAAATTAAAAGAAACAGTTTGATAACG
>Glyma13g41390.1 sequence type=CDS gene model=Glyma13g41390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCTTCCACTACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGTGACGAGTTCGTGAACAACGGTGGTCCTGGAGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCGAAGATGATGCAAGCTGGTGCTGTGCTCGGTCCCATAGAAAGGTCCACTGCAGCTAAGCCAACTCCTGGTGGTCCAATTACTCCGGTTCATGATCTCAACGTACCGTATGAGGGGACCGATGAGTATGAGACTCCTACAGCGGATATGCTTTTCCCCCCTACACCATTGCAAACTCCAATTCAAACCCCTCTACCAGGAACTGGGGATAACTCAACGTATAACATTCCTACTGGACCAAGTGACTACCCCTCTTCTGGAAATGACACAGGAGGAAATGCTGATGGAAAAGGAGCAAGACCTGCTCCATATATGCAATCTCCTTCTCCTTGGATGAACCAAAGGCCTCCACTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAGGCAGACAGGGGAACTTCTAATCAACCTCCGACACAGGACTTCTTCACGATGCCATCAGGAAAGCGAAAACGCAATGATTTAACTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGGGATGCTACACATGGAGATTTTGAAATTGAGGTACCCCCTATTAGTCAGCATCATATATATCACCAGGATGTCTGCATATCTTTTGTAAGTGGAAGGGGCATCTCTATTAATTCACATCACACTATTTCCAAAGGAAAAATGTCAGCAGATTTGGAGAGGTCGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCATATGATGATGATGATGTGCTCTCTACTCCAAATATATACAACTATGGAGAAGTGTTCAGTGAAGACTACAACATTTCTAATACACCAGCTCCTCCTGAAGTACCAGCAAGCACCCCTGCTCTCTTGGTTCAGAATGAAGTGGGTAATGATTTTGATGATGATGATGATGATGAACCTCCATTAAATGAAGAGGATGATGATGATTTAGATGACATGGAACAAGGAGAGGATCAAAATACACATCATCTTGTTTTGGCCCAGTTTGATAAGGTGACACGTACCAAGAGCAGGTGGAAATGCACATTAAAGGATGGCATCATGCACATAAATAATAAGGACATTCTCTTCAATAAGGCGACAGGAGAGTTTGAATTCTGA >Glyma13g41390.2 sequence type=CDS gene model=Glyma13g41390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCTTCCACTACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGTGACGAGTTCGTGAACAACGGTGGTCCTGGAGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCGAAGATGATGCAAGCTGGTGCTGTGCTCGGTCCCATAGAAAGGTCCACTGCAGCTAAGCCAACTCCTGGTGGTCCAATTACTCCGGTTCATGATCTCAACGTACCGTATGAGGGGACCGATGAGTATGAGACTCCTACAGCGGATATGCTTTTCCCCCCTACACCATTGCAAACTCCAATTCAAACCCCTCTACCAGGAACTGGGGATAACTCAACGTATAACATTCCTACTGGACCAAGTGACTACCCCTCTTCTGGAAATGACACAGGAGGAAATGCTGATGGAAAAGGAGCAAGACCTGCTCCATATATGCAATCTCCTTCTCCTTGGATGAACCAAAGGCCTCCACTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAGGCAGACAGGGGAACTTCTAATCAACCTCCGACACAGGACTTCTTCACGATGCCATCAGGAAAGCGAAAACGCAATGATTTAACTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGGGATGCTACACATGGAGATTTTGAAATTGAGGTAAGTGGAAGGGGCATCTCTATTAATTCACATCACACTATTTCCAAAGGAAAAATGTCAGCAGATTTGGAGAGGTCGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCATATGATGATGATGATGTGCTCTCTACTCCAAATATATACAACTATGGAGAAGTGTTCAGTGAAGACTACAACATTTCTAATACACCAGCTCCTCCTGAAGTACCAGCAAGCACCCCTGCTCTCTTGGTTCAGAATGAAGTGGGTAATGATTTTGATGATGATGATGATGATGAACCTCCATTAAATGAAGAGGATGATGATGATTTAGATGACATGGAACAAGGAGAGGATCAAAATACACATCATCTTGTTTTGGCCCAGTTTGATAAGGTGACACGTACCAAGAGCAGGTGGAAATGCACATTAAAGGATGGCATCATGCACATAAATAATAAGGACATTCTCTTCAATAAGGCGACAGGAGAGTTTGAATTCTGA
>Glyma13g41390.1 sequence type=predicted peptide gene model=Glyma13g41390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERSTAAKPTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMNQRPPLDVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGYIPQQDGAGDATHGDFEIEVPPISQHHIYHQDVCISFVSGRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF* >Glyma13g41390.2 sequence type=predicted peptide gene model=Glyma13g41390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERSTAAKPTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMNQRPPLDVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGYIPQQDGAGDATHGDFEIEVSGRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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