Report for Sequence Feature Glyma13g41360
Feature Type: gene_model
Chromosome: Gm13
Start: 41670407
stop: 41674057
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g41360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G59610 AT
Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr5:24013165-24014954 FORWARD LENGTH=268
SoyBase E_val: 6.00E-84 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0031072 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding
SoyBase N/A ISS
GO:0051082 GO-mf
Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding
SoyBase N/A ISS
PTHR24077 Panther
FAMILY NOT NAMED
JGI ISS
PF00226 PFAM
DnaJ domain
JGI ISS
UniRef100_I1M4Y8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Y8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HS35 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein DnaJ n=1 Tax=Medicago truncatula RepID=Q2HS35_MEDTR
SoyBase E_val: 2.00E-105 ISS
Expression Patterns of Glyma13g41360
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g41360
Paralog Evidence Comments
Glyma15g04040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g41360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g338600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g41360
Coding sequences of Glyma13g41360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g41360.1 sequence type=CDS gene model=Glyma13g41360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGGAACAAAGTTTTGGAGATAAGATGCATGGAATAACAACTCTCGCTCTCACTGCAACTGCAAACACAAACACATTCCTTTCTTGTCCTCTAAGATCTCTTCTACCACTTACCCCTCCATCGAATTGTTGCATACCCACTTGTAAATTTAGCTATGGAATTCGTTTCAACCATTCTCAGTGGAAGCACCAAAAAACAGAAAGATGGAGCAACAGAAATAGAACGATGGTTGTGAGAGCAAGGCGTAGCGAGTCTCCGTATGAAGTTTTGGGCGTGTCTCCATCCGCAACCGTCGACCAAATAAAAAAGGCCTATCGGAAACTTGCTCTCAAGTATCATCCCGATGTCAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGATCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAACTAGGAATATACAAGCTGAAGAAGAGTTTTATGGACTAGAGGACTTCTTTAAGGATCTTCAACAAGAATTCAGGAACTGGGAAGCAAACACTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACTGATCAAAATGATGATTATAAAACGCCTCAGGGAGGCAACACATCGAACTTTCCTGGGACAGAGACACCAAGCAATAGCAGTCAAGGTCAAGCTGGCAAGGGAAGCAGAGGCGTTGAGGATAACCTTGAGGAAATAGAAGCCACTCTGGCTCAGTTGAAAAAGGAACTAGGCTTATAG
Predicted protein sequences of Glyma13g41360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g41360.1 sequence type=predicted peptide gene model=Glyma13g41360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MREQSFGDKMHGITTLALTATANTNTFLSCPLRSLLPLTPPSNCCIPTCKFSYGIRFNHSQWKHQKTERWSNRNRTMVVRARRSESPYEVLGVSPSATVDQIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSRSRKKYDSGSRGYDFSQGSRTRNIQAEEEFYGLEDFFKDLQQEFRNWEANTASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNDDYKTPQGGNTSNFPGTETPSNSSQGQAGKGSRGVEDNLEEIEATLAQLKKELGL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
