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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma13g41340

Feature Type:gene_model
Chromosome:Gm13
Start:41662423
stop:41664183
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59550AT Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein | chr5:23998422-23999645 REVERSE LENGTH=407 SoyBaseE_val: 6.00E-88ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0051865GO-bp Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22763Panther RING ZINC FINGER PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
PF06547PFAM Protein of unknown function (DUF1117) JGI ISS
UniRef100_G7JCE1UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JCE1_MEDTR SoyBaseE_val: 1.00E-127ISS
UniRef100_I1M4Y6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Y6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g41340 not represented in the dataset

Glyma13g41340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g04080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g338400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g41340.1   sequence type=CDS   gene model=Glyma13g41340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCGGACACGACTTCCTATTGGTGCTACAGCTGCACGCGCTTCGTTCACATACAAGAACAGAACGACGTCGTTTGCCCGCGCTGCCACGGCGGCTTCGTCGAAAAGGTCACCGCCCCCCAATCGTCAAGGCAAGGCTTCCGCCGCCGACGCCGCAACGCCGGGAACCACTCGGCGTTCAACCCGGTGATCGTGCTCCGCGGACCGGGAGAGGACGAGGAGAGCAGCTTTGAGTTATACTACGACGGCTTCGACGGCGAGGGGCTCCGCCCGCTGCCATCCACCATGTCGGAGTTCTTGCTTGGATCGGGATTCGACCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCCTCGGGAGGGCTGAGAATCCACCGGCGTCTAAGGCGGCTATAGAGTCAATGCCGACGGTGGAAATCACCGAGTCTCACGTCGCGTCGGAGACGATCTGCGCCGTGTGCAAGGAAGCCTTCGAGCTTGGCGCGTTGGCGCGTGAGATGCCGTGTAAGCATCTCTACCACTCCGATTGCATTCTCCCGTGGCTTTCGATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGTTGCCGTCGGAGCAAACCGCGCCGGAAACAAGAGTCGCCGGCCAGATCGAGGAGGAGGCTGTAGGGTTGACCATATGGAGGTTGCCGGGCGGGGGATTCGCCGTCGGGAGGTTCGCCGGAGAGAGCCACTTGCCGGTGGTTTACACGGAGATGGAGAGTGACGGGAACTCCAACGAAGGTTCTAGAAGAATCTCTCTGGCGGTTGGAAGCGGCAGAGTTAGGGAAAGTCGTGGTGGTGGATTTGGGAGAATTTTCCGCAATTTGTTTGGGAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCACTCTTCAATAGAAGAAGTTCTAGAGCCTGGGTTTTGGGAAATTGA

>Glyma13g41340.1   sequence type=predicted peptide   gene model=Glyma13g41340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSDTTSYWCYSCTRFVHIQEQNDVVCPRCHGGFVEKVTAPQSSRQGFRRRRRNAGNHSAFNPVIVLRGPGEDEESSFELYYDGFDGEGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGLGRAENPPASKAAIESMPTVEITESHVASETICAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQTAPETRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESDGNSNEGSRRISLAVGSGRVRESRGGGFGRIFRNLFGRIGALTRSRSLSTSLFNRRSSRAWVLGN*







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