SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07530 | AT | Annotation by Michelle Graham. TAIR10: SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF03514 | PFAM | GRAS family transcription factor | JGI | ISS | |
| UniRef100_G7IRV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SCARECROW-like protein n=1 Tax=Medicago truncatula RepID=G7IRV1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B192 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B192 related cluster n=1 Tax=unknown RepID=UPI000233B192 | SoyBase | E_val: 0 | ISS |
|
Glyma13g41240 not represented in the dataset |
Glyma13g41240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g04173 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g337400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g41240.3 sequence type=transcript gene model=Glyma13g41240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATGAATGTGAATGATAAGAAAATAGCTGGAGTCTGCAGAAGCTCCATCCCTATATAACTCTCAGCACGGCTTGACCAATTACTATGCGACCTTTTTTATTTATCTCCCTTTTCTGTTTTCCCCTCTCTTGTCTTTCTTTCTGGACTTCCCCCAAACACTTTACTTGCAACGCTCACTCCTAATCAACACTTGTTTCCTTCCATTTGGTTTGGATTCAATTTCTCTCTTTATTTTGTTTTCCATGGCCCCAGTTCGTCTTACATGTTAGTTTTCTCTTTTCCTCCATACGCACTTGTTTTGTTTCATATTTCCCTTGCCTCTATGGATCCAAACTTTATCATTAGCGGCTACGACTTTGATGAATCAAACCACTGGGATCTTAACGGACACTACGCCAACCTTCTCAATGATGCTTTTTCCGATGTGGGCCCACTTGGTCTTTCTCAGAATGCAATTTTGAACTCGGAGCCCTTTGTTTCATCCTCTGGTTCCGCCGCCACCGACCCCGCCGCTACCACGGCGACTTTGGCTGATCCTTCACCCGAAGAAGACACTGATTTCTCAGAAACCTTCAAGTTCATTAGTCAAATTCTCTTGGAAGAGAACTTTGAGCAGAAACCGTGTATGTGTTATGACCCTCTGACCTTGCAACACACTGAGAAATCATTCTATGAGGCTCTGGAATTGGAACCATCACTTCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCTGATGGGAATTCTTCTAATTCCATTTCTGATTCCGCCAATTCTCATGATTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGATGCTTTGCATTCTTCTTCCCACGCGCCCTCTTTTGTTGTTCCACCCCATGCTCTGAATAAAATTAATGATGGAACCGTGGATTTGGATTCTTCCGTAACCAAGCTCTTGGCTGAAAATATTTTCAGTGATACTGACTCTATGTTGCAGTTTAAAAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCGGAGGCCTCAGCTTTTCACTGGGTTGGAGAGCACCGCAGTGTCTGCAGAGCCAAAGGGAAAAGGTGTAGCTCTGAAGATGGAGAATTCAATTGGGGTGAGGAGTAGAAAGAATCATGCGCGCCAAGATGAAGAAGAAGAAGAAGAAAGAAGCAACAAGCAGTCTGCTGTGTCTGCGGTTTGTGTTGAGGAGGAGAGTGAAATATCTGAAATATTTGACAGGGTGTTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTGAAAAGAATGGATCAGTGGCACAAGCTGAGAAATCGAATTTGTCTGATGGAGGGAAGGTTCGATCCAAGAGGCAAGGGAGGAAGAAGGAGACGGTGGATTTGAGGACCCTTTTGATTTTGTGTGCACAAGCTGTGTCTTCCAGTGACAACAGGACTGCTAATGAACTGTTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCGCAGAGGTTGGCTCATTATGTGGCCAATGCTCTCGAGGCTCGCTTAGTTGGTGATGGAACTGCCACCCAAATATTTTATATGAGCTACAAGAAGTTCACTACTACTGATTTCCTGAGAGCTTACCAAGTTTTCATATCTGCTTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAGATGATTATGAAAACAGCTGATGGGGCAGAAACGCTTCATATTATTGACTTTGGTATCCTCTATGGTTTCCAGTGGCCAATTCTCATAAAGTTTTTATCACGCAGACCTGGAGGCCCCCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCTGGCTTTCGTCCGACTGAAAGAATTGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAAGGCCATAGCATCGCGAAACTGGGAAACCATTCAAATTGAAGACCTCAAAATTGAGCGCAATGAGCTGCTTGCTGTGAACTGTCTGGGAGGCACTGTTCCATTATTCTTCAATTTACGATATGTTTGATACTCTCATATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGCCGGGAGATAATGAATGTGGTAGCATGTGAAGCTCTTGAGAGGGTTGAGAGGCCTGAGACATACAAACAATGGCAGGCTAGGAATACTAGAGCTGGTTTTAAGCAGCTCCCACTGGATAAGGAGATAATGACCAAATTTAGGGGCAAATTAAGGGAATGGTACCACAGGGATTTTGTCTTTGATGAAGATGGAAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCAACTTGTTGGGTGCCAGCATAATGATGTGTGTGACTCAACTCTTGTTTCAGAATTCATACTGGATGGAAGGTCACCTTCAGCTGTTGTGAACTGTGATGAATATTCTTTCCCAGGTTTGCACCAAGTGACCCTGTATAATAGTGCCAGAATTTTTCCCAGATTAGCATTAAATCCTACAATGACATGGACGCGAACATTAGGAGTCAAAATTGTTATTTACGATGCTTTTCCTTTTCTTTTCACTCTCTAACCGGCATGTACTATAGGCACTTCAGGATCCTAAGAAGTACTTAGTAAATTGGTTAAAAGGTTTTTTCATAATATCTTGTATCATTAGCTACTGATTTGATTGATTTGAAATAAGGACCTATCAAATTATTTTTTTGTTATTAATATAC
>Glyma13g41240.2 sequence type=CDS gene model=Glyma13g41240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGTTTTCTCTTTTCCTCCATACGCACTTGTTTTGTTTCATATTTCCCTTGCCTCTATGGATCCAAACTTTATCATTAGCGGCTACGACTTTGATGAATCAAACCACTGGGATCTTAACGGACACTACGCCAACCTTCTCAATGATGCTTTTTCCGATGTGGGCCCACTTGGTCTTTCTCAGAATGCAATTTTGAACTCGGAGCCCTTTGTTTCATCCTCTGGTTCCGCCGCCACCGACCCCGCCGCTACCACGGCGACTTTGGCTGATCCTTCACCCGAAGAAGACACTGATTTCTCAGAAACCTTCAAGTTCATTAGTCAAATTCTCTTGGAAGAGAACTTTGAGCAGAAACCGTGTATGTGTTATGACCCTCTGACCTTGCAACACACTGAGAAATCATTCTATGAGGCTCTGGAATTGGAACCATCACTTCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCTGATGGGAATTCTTCTAATTCCATTTCTGATTCCGCCAATTCTCATGATTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGATGCTTTGCATTCTTCTTCCCACGCGCCCTCTTTTGTTGTTCCACCCCATGCTCTGAATAAAATTAATGATGGAACCGTGGATTTGGATTCTTCCGTAACCAAGCTCTTGGCTGAAAATATTTTCAGTGATACTGACTCTATGTTGCAGTTTAAAAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCGGAGGCCTCAGCTTTTCACTGGGTTGGAGAGCACCGCAGTGTCTGCAGAGCCAAAGGGAAAAGGTGTAGCTCTGAAGATGGAGAATTCAATTGGGGTGAGGAGTAGAAAGAATCATGCGCGCCAAGATGAAGAAGAAGAAGAAGAAAGAAGCAACAAGCAGTCTGCTGTGTCTGCGGTTTGTGTTGAGGAGGAGAGTGAAATATCTGAAATATTTGACAGGGTGTTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTGAAAAGAATGGATCAGTGGCACAAGCTGAGAAATCGAATTTGTCTGATGGAGGGAAGGTTCGATCCAAGAGGCAAGGGAGGAAGAAGGAGACGGTGGATTTGAGGACCCTTTTGATTTTGTGTGCACAAGCTGTGTCTTCCAGTGACAACAGGACTGCTAATGAACTGTTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCGCAGAGGTTGGCTCATTATGTGGCCAATGCTCTCGAGGCTCGCTTAGTTGGTGATGGAACTGCCACCCAAATATTTTATATGAGCTACAAGAAGTTCACTACTACTGATTTCCTGAGAGCTTACCAAGTTTTCATATCTGCTTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAGATGATTATGAAAACAGCTGATGGGGCAGAAACGCTTCATATTATTGACTTTGGTATCCTCTATGGTTTCCAGTGGCCAATTCTCATAAAGTTTTTATCACGCAGACCTGGAGGCCCCCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCTGGCTTTCGTCCGACTGAAAGAATTGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAAGGCCATAGCATCGCGAAACTGGGAAACCATTCAAATTGAAGACCTCAAAATTGAGCGCAATGAGCTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGACGAGTCAATTGAAGTGAACAGTCCCAGAAATGCTGTTCTGAATTTAATCAGGAAGATGAAACCAGATATTTTTGTTCACAGCGTAGTAAATGGATCTTATAATGCTCCTTTCTTTCTCACACGCTTCAGGGAGGCACTGTTCCATTATTCTTCAATTTACGATATGTTTGATACTCTCATATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGCCGGGAGATAATGAATGTGGTAGCATGTGAAGCTCTTGAGAGGGTTGAGAGGCCTGAGACATACAAACAATGGCAGGCTAGGAATACTAGAGCTGGTTTTAAGCAGCTCCCACTGGATAAGGAGATAATGACCAAATTTAGGGGCAAATTAAGGGAATGGTACCACAGGGATTTTGTCTTTGATGAAGATGGAAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCAACTTGTTGGGTGCCAGCATAA >Glyma13g41240.3 sequence type=CDS gene model=Glyma13g41240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGTTTTCTCTTTTCCTCCATACGCACTTGTTTTGTTTCATATTTCCCTTGCCTCTATGGATCCAAACTTTATCATTAGCGGCTACGACTTTGATGAATCAAACCACTGGGATCTTAACGGACACTACGCCAACCTTCTCAATGATGCTTTTTCCGATGTGGGCCCACTTGGTCTTTCTCAGAATGCAATTTTGAACTCGGAGCCCTTTGTTTCATCCTCTGGTTCCGCCGCCACCGACCCCGCCGCTACCACGGCGACTTTGGCTGATCCTTCACCCGAAGAAGACACTGATTTCTCAGAAACCTTCAAGTTCATTAGTCAAATTCTCTTGGAAGAGAACTTTGAGCAGAAACCGTGTATGTGTTATGACCCTCTGACCTTGCAACACACTGAGAAATCATTCTATGAGGCTCTGGAATTGGAACCATCACTTCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCTGATGGGAATTCTTCTAATTCCATTTCTGATTCCGCCAATTCTCATGATTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGATGCTTTGCATTCTTCTTCCCACGCGCCCTCTTTTGTTGTTCCACCCCATGCTCTGAATAAAATTAATGATGGAACCGTGGATTTGGATTCTTCCGTAACCAAGCTCTTGGCTGAAAATATTTTCAGTGATACTGACTCTATGTTGCAGTTTAAAAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCGGAGGCCTCAGCTTTTCACTGGGTTGGAGAGCACCGCAGTGTCTGCAGAGCCAAAGGGAAAAGGTGTAGCTCTGAAGATGGAGAATTCAATTGGGGTGAGGAGTAGAAAGAATCATGCGCGCCAAGATGAAGAAGAAGAAGAAGAAAGAAGCAACAAGCAGTCTGCTGTGTCTGCGGTTTGTGTTGAGGAGGAGAGTGAAATATCTGAAATATTTGACAGGGTGTTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTGAAAAGAATGGATCAGTGGCACAAGCTGAGAAATCGAATTTGTCTGATGGAGGGAAGGTTCGATCCAAGAGGCAAGGGAGGAAGAAGGAGACGGTGGATTTGAGGACCCTTTTGATTTTGTGTGCACAAGCTGTGTCTTCCAGTGACAACAGGACTGCTAATGAACTGTTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCGCAGAGGTTGGCTCATTATGTGGCCAATGCTCTCGAGGCTCGCTTAGTTGGTGATGGAACTGCCACCCAAATATTTTATATGAGCTACAAGAAGTTCACTACTACTGATTTCCTGAGAGCTTACCAAGTTTTCATATCTGCTTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAGATGATTATGAAAACAGCTGATGGGGCAGAAACGCTTCATATTATTGACTTTGGTATCCTCTATGGTTTCCAGTGGCCAATTCTCATAAAGTTTTTATCACGCAGACCTGGAGGCCCCCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCTGGCTTTCGTCCGACTGAAAGAATTGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAAGGCCATAGCATCGCGAAACTGGGAAACCATTCAAATTGAAGACCTCAAAATTGAGCGCAATGAGCTGCTTGCTGTGAACTGTCTGGGAGGCACTGTTCCATTATTCTTCAATTTACGATATGTTTGA
>Glyma13g41240.2 sequence type=predicted peptide gene model=Glyma13g41240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVFSFPPYALVLFHISLASMDPNFIISGYDFDESNHWDLNGHYANLLNDAFSDVGPLGLSQNAILNSEPFVSSSGSAATDPAATTATLADPSPEEDTDFSETFKFISQILLEENFEQKPCMCYDPLTLQHTEKSFYEALELEPSLPLSPNQHPLESPDGNSSNSISDSANSHDLKPSSPNTPVSDALHSSSHAPSFVVPPHALNKINDGTVDLDSSVTKLLAENIFSDTDSMLQFKRGLEEASKFLPRRPQLFTGLESTAVSAEPKGKGVALKMENSIGVRSRKNHARQDEEEEEERSNKQSAVSAVCVEEESEISEIFDRVLLSVENVPLCAEKNGSVAQAEKSNLSDGGKVRSKRQGRKKETVDLRTLLILCAQAVSSSDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGDGTATQIFYMSYKKFTTTDFLRAYQVFISACPFKKFAHFFANKMIMKTADGAETLHIIDFGILYGFQWPILIKFLSRRPGGPPKLRITGIEYPQPGFRPTERIEETGRRLAKYCKRFNVPFEYKAIASRNWETIQIEDLKIERNELLAVNCLVRFKNLLDESIEVNSPRNAVLNLIRKMKPDIFVHSVVNGSYNAPFFLTRFREALFHYSSIYDMFDTLISRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQARNTRAGFKQLPLDKEIMTKFRGKLREWYHRDFVFDEDGNWMLQGWKGRILYASTCWVPA* >Glyma13g41240.3 sequence type=predicted peptide gene model=Glyma13g41240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVFSFPPYALVLFHISLASMDPNFIISGYDFDESNHWDLNGHYANLLNDAFSDVGPLGLSQNAILNSEPFVSSSGSAATDPAATTATLADPSPEEDTDFSETFKFISQILLEENFEQKPCMCYDPLTLQHTEKSFYEALELEPSLPLSPNQHPLESPDGNSSNSISDSANSHDLKPSSPNTPVSDALHSSSHAPSFVVPPHALNKINDGTVDLDSSVTKLLAENIFSDTDSMLQFKRGLEEASKFLPRRPQLFTGLESTAVSAEPKGKGVALKMENSIGVRSRKNHARQDEEEEEERSNKQSAVSAVCVEEESEISEIFDRVLLSVENVPLCAEKNGSVAQAEKSNLSDGGKVRSKRQGRKKETVDLRTLLILCAQAVSSSDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGDGTATQIFYMSYKKFTTTDFLRAYQVFISACPFKKFAHFFANKMIMKTADGAETLHIIDFGILYGFQWPILIKFLSRRPGGPPKLRITGIEYPQPGFRPTERIEETGRRLAKYCKRFNVPFEYKAIASRNWETIQIEDLKIERNELLAVNCLGGTVPLFFNLRYV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
