Report for Sequence Feature Glyma13g40980
Feature Type: gene_model
Chromosome: Gm13
Start: 41394398
stop: 41399116
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g40980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G46450 AT
Annotation by Michelle Graham. TAIR10: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486
SoyBase E_val: 4.00E-162 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
KOG1470
KOG
Phosphatidylinositol transfer protein PDR16 and related proteins
JGI ISS
KOG1471
KOG
Phosphatidylinositol transfer protein SEC14 and related proteins
JGI ISS
PTHR10174 Panther
RETINALDEHYDE BINDING PROTEIN-RELATED
JGI ISS
PTHR10174:SF3 Panther
SEC14 RELATED PROTEIN
JGI ISS
PF00650 PFAM
CRAL/TRIO domain
JGI ISS
UniRef100_G7JUR8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sec14 cytosolic factor n=1 Tax=Medicago truncatula RepID=G7JUR8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1M4V1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4V1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g40980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g40980
Paralog Evidence Comments
Glyma15g04480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g40980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g334700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g40980
Transcripts of Glyma13g40980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g40980.2 sequence type=transcript gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGAAAATACATAAATACGGCTGAGGGCGATGTTATGGTAGTCGCGCCGGTTCATTGACTTACAGCGACGAAGGAGGATTGATCCATAATTGGGGATGCGCTCACCTTGCAAACTGTTGCAATCCTATTTCAGTTTACATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAGCCCTGATAATGCAAGACACGTCAAATTTAGTTTGTATCCCTTGACGAGTAAATCTTTCTTGTGGGCGGCATAATCCTCTTCCAACAGTAACACTGCATACTTTTGTAGATTCTTCAGATAAAAAATATCTAGTTATCTTTTCAATTTTATAACTCTTGTAACAAATAAAATAAAATCATGTCAAATATTCTACCTTACTGCTGAAAATTGCTTACGATTATTATATTGCTT
>Glyma13g40980.3 sequence type=transcript gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGAAAATACATAAATACGGCTGAGGGCGATGTTATGGTAGTCGCGCCGGTTCATTGACTTACAGCGACGAAGGAGGATTGATCCATAATTGGGGATGCGCTCACCTTGCAAACTGTTGCAATCCTATTTCAGTTTACATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAGCCCTGATAATGCAAGACACGTCAAATTTAGTTTGTATCCCTTGACGAGTAAATCTTTCTTGTGGGCGGCATAATCCTCTTCCAACAGTAACACTGCATACTTTTGTAGATTCTTCAGATAAAAAATATCTAGTTATCTTTTCAATTTTATAACTCTTGTAACAAATAAAATAAAATCATGTCAAATATTCTACCTTACTGCTGAAAATTGCTTACGATTATTATATTGCTT
Coding sequences of Glyma13g40980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g40980.1 sequence type=CDS gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG
>Glyma13g40980.2 sequence type=CDS gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG
>Glyma13g40980.3 sequence type=CDS gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG
Predicted protein sequences of Glyma13g40980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g40980.1 sequence type=predicted peptide gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTSQCLTDPKILESEKWLTQLYQELENQGLSLPERINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH*
>Glyma13g40980.2 sequence type=predicted peptide gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTRINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH*
>Glyma13g40980.3 sequence type=predicted peptide gene model=Glyma13g40980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTSQCLTDPKILESEKWLTQLYQELENQGLSLPERINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH*