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Report for Sequence Feature Glyma13g40980

Feature Type:gene_model
Chromosome:Gm13
Start:41394398
stop:41399116
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46450AT Annotation by Michelle Graham. TAIR10: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486 SoyBaseE_val: 4.00E-162ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
KOG1470 KOG Phosphatidylinositol transfer protein PDR16 and related proteins JGI ISS
KOG1471 KOG Phosphatidylinositol transfer protein SEC14 and related proteins JGI ISS
PTHR10174Panther RETINALDEHYDE BINDING PROTEIN-RELATED JGI ISS
PTHR10174:SF3Panther SEC14 RELATED PROTEIN JGI ISS
PF00650PFAM CRAL/TRIO domain JGI ISS
UniRef100_G7JUR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sec14 cytosolic factor n=1 Tax=Medicago truncatula RepID=G7JUR8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1M4V1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4V1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g04480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g334700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g40980.2   sequence type=transcript   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAAAATACATAAATACGGCTGAGGGCGATGTTATGGTAGTCGCGCCGGTTCATTGACTTACAGCGACGAAGGAGGATTGATCCATAATTGGGGATGCGCTCACCTTGCAAACTGTTGCAATCCTATTTCAGTTTACATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAGCCCTGATAATGCAAGACACGTCAAATTTAGTTTGTATCCCTTGACGAGTAAATCTTTCTTGTGGGCGGCATAATCCTCTTCCAACAGTAACACTGCATACTTTTGTAGATTCTTCAGATAAAAAATATCTAGTTATCTTTTCAATTTTATAACTCTTGTAACAAATAAAATAAAATCATGTCAAATATTCTACCTTACTGCTGAAAATTGCTTACGATTATTATATTGCTT

>Glyma13g40980.3   sequence type=transcript   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAAAATACATAAATACGGCTGAGGGCGATGTTATGGTAGTCGCGCCGGTTCATTGACTTACAGCGACGAAGGAGGATTGATCCATAATTGGGGATGCGCTCACCTTGCAAACTGTTGCAATCCTATTTCAGTTTACATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAGCCCTGATAATGCAAGACACGTCAAATTTAGTTTGTATCCCTTGACGAGTAAATCTTTCTTGTGGGCGGCATAATCCTCTTCCAACAGTAACACTGCATACTTTTGTAGATTCTTCAGATAAAAAATATCTAGTTATCTTTTCAATTTTATAACTCTTGTAACAAATAAAATAAAATCATGTCAAATATTCTACCTTACTGCTGAAAATTGCTTACGATTATTATATTGCTT

>Glyma13g40980.1   sequence type=CDS   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG

>Glyma13g40980.2   sequence type=CDS   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG

>Glyma13g40980.3   sequence type=CDS   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG

>Glyma13g40980.1   sequence type=predicted peptide   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTSQCLTDPKILESEKWLTQLYQELENQGLSLPERINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH*

>Glyma13g40980.2   sequence type=predicted peptide   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTRINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH*

>Glyma13g40980.3   sequence type=predicted peptide   gene model=Glyma13g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTSQCLTDPKILESEKWLTQLYQELENQGLSLPERINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH*







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